Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
41e243e1 by Andreas Tille at 2022-01-26T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,60 +1,59 @@
-Last-Update: Wed, 26 Jan 2022 01:42:03 +0000
+Last-Update: Wed, 26 Jan 2022 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 181 | {covid-19,imaging}
|
- orthanc | 104 | {imaging,covid-19,practice}
|
+ orthanc | 105 | {imaging,covid-19,practice}
|
orthanc-wsi | 56 |
{practice,laboratory,covid-19,imaging,his,oncology} |
- htsjdk | 32 | {bio-dev}
|
+ htsjdk | 34 | {bio-dev}
|
dicom3tools | 29 | {imaging}
|
- amide | 28 | {imaging}
|
- dicomscope | 28 | {imaging}
|
- dcm2niix | 23 | {imaging}
|
+ amide | 27 | {imaging}
|
+ dicomscope | 26 | {imaging}
|
+ dcm2niix | 24 | {imaging}
|
orthanc-webviewer | 20 | {imaging}
|
ngs-sdk | 15 | {bio-dev}
|
gnumed-server | 14 | {practice,covid-19}
|
- invesalius | 14 | {imaging}
|
gdcm | 13 | {covid-19,imaging}
|
+ invesalius | 12 | {imaging}
|
minc-tools | 12 | {imaging}
|
- gdcm | 11 | {imaging-dev}
|
+ adun.app | 10 | {bio}
|
+ gdcm | 10 | {imaging-dev}
|
lagan | 10 | {bio}
|
- adun.app | 9 | {bio}
|
- ngs-sdk | 9 | {bio-dev}
|
nifti2dicom | 9 | {imaging}
|
- openslide | 9 | {imaging}
|
orthanc-dicomweb | 9 | {imaging,covid-19}
|
pixelmed | 9 | {imaging}
|
biojava-live | 8 | {bio-dev}
|
dicomnifti | 8 | {imaging}
|
+ libminc | 8 | {imaging-dev}
|
+ librg-utils-perl | 8 | {bio}
|
mia | 8 | {imaging}
|
mrtrix3 | 8 | {imaging}
|
+ ngs-sdk | 8 | {bio-dev}
|
+ nifticlib | 8 | {imaging-dev}
|
nifticlib | 8 | {imaging}
|
+ openslide | 8 | {imaging}
|
orthanc-postgresql | 8 | {imaging}
|
- libminc | 7 | {imaging-dev}
|
- librg-utils-perl | 7 | {bio}
|
+ ngs-sdk | 7 | {bio-dev}
|
nifti2dicom | 7 | {imaging}
|
- nifticlib | 7 | {imaging-dev}
|
plastimatch | 7 | {imaging}
|
libncl | 6 | {bio}
|
- ngs-sdk | 6 | {bio-dev}
|
obitools | 6 | {bio}
|
- dicompyler | 5 | {oncology}
|
jebl2 | 5 | {bio-dev}
|
+ libdivsufsort | 5 | {bio-dev}
|
nipype | 5 | {imaging-dev,imaging}
|
- openslide | 5 | {imaging-dev}
|
orthanc-mysql | 5 | {imaging}
|
salmon | 5 | {bio,covid-19}
|
treeview | 5 | {bio-phylogeny,bio}
|
arden | 4 | {bio,cloud}
|
bio-tradis | 4 | {bio,bio-dev}
|
+ dicompyler | 4 | {oncology}
|
elastix | 4 | {imaging}
|
embassy-domalign | 4 | {cloud,bio}
|
getdata | 4 | {bio}
|
ghmm | 4 | {bio}
|
jellyfish1 | 4 | {bio}
|
king | 4 | {typesetting,imaging}
|
- libdivsufsort | 4 | {bio-dev}
|
- melting | 4 | {bio,cloud}
|
+ openslide | 4 | {imaging-dev}
|
pymia | 4 | {imaging-dev}
|
spread-phy | 4 | {bio-phylogeny,bio}
|
staden | 4 | {bio}
|
@@ -70,10 +69,13 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000
clonalorigin | 3 | {bio}
|
embassy-domainatrix | 3 | {bio,cloud}
|
lamarc | 3 | {bio}
|
+ libbio-mage-utils-perl | 3 | {bio-dev}
|
libsbml | 3 | {bio-dev}
|
+ melting | 3 | {bio,cloud}
|
mhap | 3 | {bio-ngs,bio}
|
orthanc-gdcm | 3 | {imaging}
|
orthanc-python | 3 | {covid-19}
|
+ oscar | 3 | {data,tools,practice}
|
phyutility | 3 | {bio,cloud}
|
piler | 3 | {bio}
|
rambo-k | 3 | {bio}
|
@@ -97,12 +99,10 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000
hinge | 2 | {bio}
|
ipig | 2 | {bio}
|
jmodeltest | 2 | {bio,bio-phylogeny}
|
- libbio-mage-utils-perl | 2 | {bio-dev}
|
libpal-java | 2 | {bio-dev}
|
librdp-taxonomy-tree-java | 2 | {bio-dev}
|
mauve-aligner | 2 | {bio}
|
metaphlan2 | 2 | {bio}
|
- oscar | 2 | {data,tools,practice}
|
placnet | 2 | {bio}
|
plasmidseeker | 2 | {bio}
|
proalign | 2 | {bio,bio-phylogeny}
|
@@ -124,10 +124,12 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000
cufflinks | 1 | {bio,cloud}
|
emmax | 1 | {bio}
|
kmerresistance | 1 | {bio}
|
+ libchado-perl | 1 | {bio-dev}
|
libgenome | 1 | {bio-dev}
|
libvistaio | 1 | {imaging-dev}
|
microbegps | 1 | {bio}
|
mssstest | 1 | {tools}
|
+ opencfu | 1 | {laboratory}
|
pigx-rnaseq | 1 | {bio,covid-19}
|
pique | 1 | {bio}
|
plasmidid | 1 | {covid-19,bio}
|
@@ -164,7 +166,6 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000
libbpp-raa | 0 | {bio-dev}
|
libbpp-seq | 0 | {bio-dev}
|
libbpp-seq-omics | 0 | {bio-dev}
|
- libchado-perl | 0 | {bio-dev}
|
libctapimkt | 0 | {practice}
|
libgkarrays | 0 | {bio-dev}
|
libhmsbeagle | 0 | {bio-dev}
|
@@ -187,15 +188,14 @@ Last-Update: Wed, 26 Jan 2022 01:42:03 +0000
milib | 0 | {covid-19,bio-dev}
|
ncbi-vdb | 0 | {bio-dev}
|
nifticlib | 0 | {imaging-dev}
|
- opencfu | 0 | {laboratory}
|
opensurgsim | 0 | {imaging-dev}
|
orthanc-imagej | 0 | {imaging}
|
papyrus | 0 | {imaging-dev}
|
parallel-fastq-dump | 0 | {covid-19}
|
pbcopper | 0 | {bio-dev}
|
pbseqlib | 0 | {bio-dev}
|
- python-seqcluster | 0 | {covid-19,bio-dev}
|
python-seqcluster | 0 | {bio}
|
+ python-seqcluster | 0 | {covid-19,bio-dev}
|
resfinder-db | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
shovill | 0 | {covid-19,bio}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/41e243e138ec4202a8d587d963a69c53d407136e
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/41e243e138ec4202a8d587d963a69c53d407136e
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