The following commit has been merged in the master branch:
commit 9b8f8b203f50787eb66471ac34063399e577ad9b
Author: Andreas Tille <[email protected]>
Date:   Fri May 11 11:54:55 2012 +0200

    Prevent error message piped into manpage

diff --git a/debian/rules b/debian/rules
index 82e712a..fb55e64 100755
--- a/debian/rules
+++ b/debian/rules
@@ -19,7 +19,7 @@ override_dh_auto_install:
 
        # try to create man pages whereever possible
        mkdir -p $(mandir)
-       help2man --no-info --no-discard-stderr \
+       help2man --no-info --no-discard-stderr  -h "" \
            --name='converts bam directly into fastx' \
            --version-string="$(version)" \
                 $(bindir)/bam2fastx > $(mandir)/bam2fastx.1

-- 
A spliced read mapper for RNA-Seq

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