Pierre Gruet pushed to branch master at Debian Med / milib
Commits: 81930900 by Pierre Gruet at 2022-11-14T21:02:10+01:00 New upstream version 2.1.0+dfsg - - - - - 4bc5dd0a by Pierre Gruet at 2022-11-14T21:02:13+01:00 Update upstream source from tag 'upstream/2.1.0+dfsg' Update to upstream version '2.1.0+dfsg' with Debian dir abb268cfde3c40f694dc94a9624435d35548f53d - - - - - 124991fb by Pierre Gruet at 2022-11-14T21:06:15+01:00 Refreshing patches - - - - - 85e2b12e by Pierre Gruet at 2022-11-14T21:09:02+01:00 Refreshing d/copyright - - - - - 96d28ff6 by Pierre Gruet at 2022-11-14T21:10:29+01:00 Updating changelog - - - - - 8eb7a1ba by Pierre Gruet at 2022-11-14T21:11:07+01:00 Trim trailing whitespace. Changes-By: lintian-brush Fixes: lintian: trailing-whitespace See-also: https://lintian.debian.org/tags/trailing-whitespace.html - - - - - 1fad29fb by Pierre Gruet at 2022-11-14T21:57:39+01:00 Patching out a flaky assertion in a test - - - - - e638e10b by Pierre Gruet at 2022-11-14T21:57:56+01:00 Upload to unstable - - - - - 30 changed files: - + .mi-ci/hooks/test-unit-before.sh - build.gradle.kts - debian/changelog - debian/copyright - debian/patches/build_gradle.patch - + debian/patches/flaky_test.patch - debian/patches/series - init.sh - − src/main/java/com/milaboratory/cli/ABaseCommand.java - − src/main/java/com/milaboratory/cli/ACommand.java - − src/main/java/com/milaboratory/cli/ACommandSimpleExport.java - − src/main/java/com/milaboratory/cli/ACommandWithOutput.java - − src/main/java/com/milaboratory/cli/ACommandWithSmartOverwrite.java - − src/main/java/com/milaboratory/cli/ACommandWithSmartOverwriteWithSingleInput.java - − src/main/java/com/milaboratory/cli/ActionConfiguration.java - − src/main/java/com/milaboratory/cli/BinaryFileInfo.java - − src/main/java/com/milaboratory/cli/BinaryFileInfoExtractor.java - − src/main/java/com/milaboratory/cli/PipelineConfiguration.java - − src/main/java/com/milaboratory/cli/PipelineConfigurationReader.java - − src/main/java/com/milaboratory/cli/PipelineConfigurationWriter.java - − src/main/java/com/milaboratory/cli/ValidationException.java - src/main/java/com/milaboratory/core/PairedEndReadsLayout.java - src/main/java/com/milaboratory/core/alignment/AffineGapAlignmentScoring.java - src/main/java/com/milaboratory/core/alignment/AlignmentUtils.java - src/main/java/com/milaboratory/core/alignment/BandedAffineAligner.java - src/main/java/com/milaboratory/core/io/binary/AlignmentSerializer.java - src/main/java/com/milaboratory/core/io/sequence/SequenceRead.java - src/main/java/com/milaboratory/core/io/sequence/SingleRead.java - src/main/java/com/milaboratory/core/io/sequence/fastq/SingleFastqReader.java - src/main/java/com/milaboratory/core/merger/MismatchOnlyPairedReadMerger.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/milib/-/compare/6136ec0724f9953ca53fa355745534d35d049484...e638e10b9b48db2e7358e27827b3803987483c24 -- View it on GitLab: https://salsa.debian.org/med-team/milib/-/compare/6136ec0724f9953ca53fa355745534d35d049484...e638e10b9b48db2e7358e27827b3803987483c24 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
