Pierre Gruet pushed to branch upstream at Debian Med / milib
Commits: 81930900 by Pierre Gruet at 2022-11-14T21:02:10+01:00 New upstream version 2.1.0+dfsg - - - - - 30 changed files: - + .mi-ci/hooks/test-unit-before.sh - build.gradle.kts - init.sh - − src/main/java/com/milaboratory/cli/ABaseCommand.java - − src/main/java/com/milaboratory/cli/ACommand.java - − src/main/java/com/milaboratory/cli/ACommandSimpleExport.java - − src/main/java/com/milaboratory/cli/ACommandWithOutput.java - − src/main/java/com/milaboratory/cli/ACommandWithSmartOverwrite.java - − src/main/java/com/milaboratory/cli/ACommandWithSmartOverwriteWithSingleInput.java - − src/main/java/com/milaboratory/cli/ActionConfiguration.java - − src/main/java/com/milaboratory/cli/BinaryFileInfo.java - − src/main/java/com/milaboratory/cli/BinaryFileInfoExtractor.java - − src/main/java/com/milaboratory/cli/PipelineConfiguration.java - − src/main/java/com/milaboratory/cli/PipelineConfigurationReader.java - − src/main/java/com/milaboratory/cli/PipelineConfigurationWriter.java - − src/main/java/com/milaboratory/cli/ValidationException.java - src/main/java/com/milaboratory/core/PairedEndReadsLayout.java - src/main/java/com/milaboratory/core/alignment/AffineGapAlignmentScoring.java - src/main/java/com/milaboratory/core/alignment/AlignmentUtils.java - src/main/java/com/milaboratory/core/alignment/BandedAffineAligner.java - src/main/java/com/milaboratory/core/io/binary/AlignmentSerializer.java - src/main/java/com/milaboratory/core/io/sequence/SequenceRead.java - src/main/java/com/milaboratory/core/io/sequence/SingleRead.java - src/main/java/com/milaboratory/core/io/sequence/fastq/SingleFastqReader.java - src/main/java/com/milaboratory/core/merger/MismatchOnlyPairedReadMerger.java - src/main/java/com/milaboratory/core/merger/PairedReadMergingResult.java - src/main/java/com/milaboratory/core/sequence/IO.java - + src/main/java/com/milaboratory/core/sequence/NSQTuple.java - src/main/java/com/milaboratory/core/sequence/ShortSequenceSet.java - src/main/java/com/milaboratory/core/sequence/quality/ReadTrimmerListener.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/milib/-/commit/81930900082229fc582f7871cca7e357807c94c0 -- View it on GitLab: https://salsa.debian.org/med-team/milib/-/commit/81930900082229fc582f7871cca7e357807c94c0 You're receiving this email because of your account on salsa.debian.org.
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