Author: tille Date: 2012-05-21 14:08:23 +0000 (Mon, 21 May 2012) New Revision: 10925
Modified: trunk/packages/king/trunk/debian/README.source trunk/packages/king/trunk/debian/changelog Log: Explain handling of ndft files as requested by ftpmaster Modified: trunk/packages/king/trunk/debian/README.source =================================================================== --- trunk/packages/king/trunk/debian/README.source 2012-05-21 12:46:50 UTC (rev 10924) +++ trunk/packages/king/trunk/debian/README.source 2012-05-21 14:08:23 UTC (rev 10925) @@ -9,13 +9,37 @@ Upstream provides a ZIP file full of prebuilded binary files (in parts without source. So this archive was heavily stripped using the script -debian/get-orig-source. Moreover a component (molikin) was missing in -the upstream source and was sended by the authors to Andreas Tille -<[email protected]>. To enable building the package this zip archive is -temporarily provided at - http://people.debian.org/~tille/packages/king/molikin.zip -The debian/get-orig-source script will only download this in case it -is really missing in the upstream source - so may be with next upstream -release this workaround will be dropped automatically. +debian/get-orig-source. +The source tarball contains some binarie files and the handling of these +is described in a mail from upstream which can be read here: + + http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-May/015269.html + +Here is a copy of this mail: + + Date: Fri, 4 May 2012 10:46:35 -0400 + From: Ian Davis<[email protected]> + To: Andreas Tille<[email protected]> + Cc: Vincent Chen<[email protected]>, "Vincent B. Chen"<[email protected]>, + Debian Med Packaging Team<[email protected]> + Subject: Re: What are ndft files and how to edit these + + Hi Andreas, + + The ndft files are N-dimensional scalar fields in binary format, + representing the statistical density of various side-chain conformations. + See http://kinemage.biochem.duke.edu/databases/rotamer.php, especially the + Son Of download and its README file ( + http://kinemage.biochem.duke.edu/databases/READMEforTop500angleData.html). + The binary format is straightforward but made up, you'd have to read the + code in that download to reverse engineer the format, I don't remember it + any more :) I think I called that package Silk, the one that contains the + reader/writer code. + + The files are used by tools for rebuilding protein structure, to judge how + (un)favorable a proposed conformation is. Without them, those tools won't + work, though other parts of KiNG may (or may not, depends how good my error + handling code was). + -- Andreas Tille <[email protected]> Wed, 18 Apr 2012 14:27:49 +0200 Modified: trunk/packages/king/trunk/debian/changelog =================================================================== --- trunk/packages/king/trunk/debian/changelog 2012-05-21 12:46:50 UTC (rev 10924) +++ trunk/packages/king/trunk/debian/changelog 2012-05-21 14:08:23 UTC (rev 10925) @@ -3,6 +3,9 @@ * New upstream version * debian/get-orig-source: This version includes molikin so the separate fetching of this source is not needed any more. + * debian/README.source: + - drop remark about missing parts of source code + - explain handling of ndft files -- Andreas Tille <[email protected]> Mon, 21 May 2012 14:45:14 +0200 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
