Andreas Tille pushed to branch master at Debian Med / trinityrnaseq
Commits: db7490b7 by Andreas Tille at 2023-01-21T12:04:50+01:00 routine-update: New upstream version - - - - - 8f062390 by Andreas Tille at 2023-01-21T12:04:55+01:00 New upstream version 2.15.0+dfsg - - - - - a0b93e57 by Andreas Tille at 2023-01-21T12:07:35+01:00 Update upstream source from tag 'upstream/2.15.0+dfsg' Update to upstream version '2.15.0+dfsg' with Debian dir a358fb171c02bdafc85e07e0bf202b62578e84da - - - - - 832df6ad by Andreas Tille at 2023-01-21T12:07:35+01:00 routine-update: Standards-Version: 4.6.2 - - - - - 62612843 by Andreas Tille at 2023-01-21T12:15:30+01:00 Refresh patches - - - - - 30 changed files: - Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl - Changelog.txt - Chrysalis/analysis/ReadsToTranscripts.cc - Docker/Dockerfile - Docker/VERSION.txt - PerlLib/SAM_entry.pm - Trinity - debian/changelog - debian/control - debian/patches/adjust-trimmomatic-adapters-path - debian/patches/disable-version-check - debian/patches/fix_system_paths - + sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.HpcGridRunner.singularity_intra.sh - + sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.intra.sh - sample_data/test_Trinity_Assembly/runMe.sh - trinity-plugins/ParaFly/Makefile - trinity-plugins/ParaFly/config.log - trinity-plugins/ParaFly/config.status - trinity-plugins/ParaFly/src/Makefile - trinity-plugins/bamsifter/build_htslib.sh - trinity-plugins/bamsifter/sift_bam_max_cov.cpp - trinity_ext_sample_data/test_Assembly_DiffReadFormattings/Makefile - trinity_ext_sample_data/test_Assembly_DiffReadFormattings/ensure_min_asm.pl - trinity_ext_sample_data/test_GenomeGuidedTrinity/run_Schizo_TrinityGG_jaccard_clip.sh - trinity_ext_sample_data/test_GenomeGuidedTrinity/run_chr17_GG_wLongreads.sh - trinity_ext_sample_data/test_GenomeGuidedTrinity/run_genome-guided_Trinity_use_existing_bam.sh - trinity_ext_sample_data/test_GenomeGuidedTrinity/run_small_GG_mutliScaff_test.sh - trinity_ext_sample_data/test_full_edgeR_pipeline/Makefile - util/insilico_read_normalization.pl - + util/misc/SAM_to_gff3.minimap2.pl The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/bfa66f4a3c87bc9a427d2d29658ac0175ce146ef...62612843604d3e647193b85efa64453a16fd79b3 -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/bfa66f4a3c87bc9a427d2d29658ac0175ce146ef...62612843604d3e647193b85efa64453a16fd79b3 You're receiving this email because of your account on salsa.debian.org.
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