Pierre Gruet pushed to branch upstream at Debian Med / drop-seq
Commits: 4f6bae38 by Pierre Gruet at 2023-01-22T09:10:13+01:00 New upstream version 2.5.2+dfsg - - - - - 28 changed files: - build.xml - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/CompareAnnotationFlags.java - src/java/org/broadinstitute/dropseqrna/annotation/FunctionalDataProcessor.java - src/java/org/broadinstitute/dropseqrna/barnyard/DGECommandLineBase.java - src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java - + src/java/org/broadinstitute/dropseqrna/barnyard/DownsampleTranscriptsAndQuantiles.java - src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java - + src/java/org/broadinstitute/dropseqrna/barnyard/UMICollectionByCellParser.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtils.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/DetectDoublets.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/SamplePairAssignmentForCell.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/FilterDge.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollection.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java - src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java - src/java/org/broadinstitute/dropseqrna/censusseq/CommonSNPsData.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeGradientAdjustment.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPs.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPsResult.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosGradientFunction.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosLikelihoodFunctionCommonSNPs.java - + src/java/org/broadinstitute/dropseqrna/eqtl/CreateMetaCells.java - + src/java/org/broadinstitute/dropseqrna/eqtl/DonorMergeStrategy.java - + src/java/org/broadinstitute/dropseqrna/eqtl/MetaCellMetrics.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/4f6bae3860dbc6794ebaba7dd37b7cb7515975c0 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/4f6bae3860dbc6794ebaba7dd37b7cb7515975c0 You're receiving this email because of your account on salsa.debian.org.
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