Pierre Gruet pushed to branch master at Debian Med / drop-seq
Commits: 4f6bae38 by Pierre Gruet at 2023-01-22T09:10:13+01:00 New upstream version 2.5.2+dfsg - - - - - 08090daf by Pierre Gruet at 2023-01-22T09:12:21+01:00 Update upstream source from tag 'upstream/2.5.2+dfsg' Update to upstream version '2.5.2+dfsg' with Debian dir bda00e1ad06cf0f899b8fccdad61f2524bf7682b - - - - - 53805441 by Pierre Gruet at 2023-01-22T09:14:57+01:00 Dropping unexisting java-runtime package from the list of runtime dependencies - - - - - d63162a8 by Pierre Gruet at 2023-01-22T09:18:25+01:00 Refreshing d/copyright - - - - - 8cbbd4a3 by Pierre Gruet at 2023-01-22T09:19:06+01:00 Updating changelog - - - - - a1aaded5 by Pierre Gruet at 2023-01-22T09:19:15+01:00 Upload to unstable - - - - - 30 changed files: - build.xml - debian/changelog - debian/control - debian/copyright - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/CompareAnnotationFlags.java - src/java/org/broadinstitute/dropseqrna/annotation/FunctionalDataProcessor.java - src/java/org/broadinstitute/dropseqrna/barnyard/DGECommandLineBase.java - src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java - + src/java/org/broadinstitute/dropseqrna/barnyard/DownsampleTranscriptsAndQuantiles.java - src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java - + src/java/org/broadinstitute/dropseqrna/barnyard/UMICollectionByCellParser.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtils.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/DetectDoublets.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/SamplePairAssignmentForCell.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/FilterDge.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollection.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java - src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java - src/java/org/broadinstitute/dropseqrna/censusseq/CommonSNPsData.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeGradientAdjustment.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPs.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosCommonSNPsResult.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosGradientFunction.java - src/java/org/broadinstitute/dropseqrna/censusseq/OptimizeSampleRatiosLikelihoodFunctionCommonSNPs.java - + src/java/org/broadinstitute/dropseqrna/eqtl/CreateMetaCells.java - + src/java/org/broadinstitute/dropseqrna/eqtl/DonorMergeStrategy.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/e51614e57593c3243fccc2506dfdd6a644767805...a1aaded58271ad0f43a0f76fc67a04382ffd1992 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/e51614e57593c3243fccc2506dfdd6a644767805...a1aaded58271ad0f43a0f76fc67a04382ffd1992 You're receiving this email because of your account on salsa.debian.org.
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