Author: tille Date: 2012-05-24 12:42:36 +0000 (Thu, 24 May 2012) New Revision: 10989
Added: trunk/packages/proalign/ trunk/packages/proalign/trunk/ trunk/packages/proalign/trunk/debian/ trunk/packages/proalign/trunk/debian/changelog trunk/packages/proalign/trunk/debian/compat trunk/packages/proalign/trunk/debian/control trunk/packages/proalign/trunk/debian/copyright trunk/packages/proalign/trunk/debian/upstream trunk/packages/proalign/trunk/debian/watch Log: Turn information from tasks file and WNPP in something machine readable Added: trunk/packages/proalign/trunk/debian/changelog =================================================================== --- trunk/packages/proalign/trunk/debian/changelog (rev 0) +++ trunk/packages/proalign/trunk/debian/changelog 2012-05-24 12:42:36 UTC (rev 10989) @@ -0,0 +1,5 @@ +proalign (0.603-1) unstable; urgency=low + + * Initial release (Closes: #378290) + + -- Andreas Tille <[email protected]> Thu, 24 May 2012 14:30:13 +0200 Added: trunk/packages/proalign/trunk/debian/compat =================================================================== --- trunk/packages/proalign/trunk/debian/compat (rev 0) +++ trunk/packages/proalign/trunk/debian/compat 2012-05-24 12:42:36 UTC (rev 10989) @@ -0,0 +1 @@ +9 Added: trunk/packages/proalign/trunk/debian/control =================================================================== --- trunk/packages/proalign/trunk/debian/control (rev 0) +++ trunk/packages/proalign/trunk/debian/control 2012-05-24 12:42:36 UTC (rev 10989) @@ -0,0 +1,28 @@ +Source: proalign +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.3 +Homepage: http://ueg.ulb.ac.be/ProAlign/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/proalign/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/proalign/trunk/ + +Package: proalign +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Probabilistic multiple alignment program + ProAlign performs probabilistic sequence alignments using hidden Markov + models (HMM). It includes a graphical interface (GUI) allowing to (i) + perform alignments of nucleotide or amino-acid sequences, (ii) view the + quality of solutions, (iii) filter the unreliable alignment regions and + (iv) export alignments to other softwares. + . + ProAlign uses a progressive method, such that multiple alignment is + created stepwise by performing pairwise alignments in the nodes of a + guide tree. Sequences are described with vectors of character + probabilities, and each pairwise alignment reconstructs the ancestral + (parent) sequence by computing the probabilities of different + characters according to an evolutionary model. \ No newline at end of file Added: trunk/packages/proalign/trunk/debian/copyright =================================================================== --- trunk/packages/proalign/trunk/debian/copyright (rev 0) +++ trunk/packages/proalign/trunk/debian/copyright 2012-05-24 12:42:36 UTC (rev 10989) @@ -0,0 +1,35 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: ProAlign +Upstream-Contact: Ari Löytynoja & Michel C. Milinkovitch +Source: http://ueg.ulb.ac.be/ProAlign/ + +Files: * +Copyright: © 2002-2003 Ari Löytynoja and Michel C. Milinkovitch. +License: GPL-2+ + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: GPL-2+ + +License: GPL-2+ + This program is free software; you can redistribute it + and/or modify it under the terms of the GNU General Public + License as published by the Free Software Foundation; either + version 2 of the License, or (at your option) any later + version. + . + This program is distributed in the hope that it will be + useful, but WITHOUT ANY WARRANTY; without even the implied + warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the GNU General Public License for more + details. + . + You should have received a copy of the GNU General Public + License along with this package; if not, write to the Free + Software Foundation, Inc., 51 Franklin St, Fifth Floor, + Boston, MA 02110-1301 USA + . + On Debian systems, the full text of the GNU General Public + License version 2 can be found in the file + `/usr/share/common-licenses/GPL-2'. + Added: trunk/packages/proalign/trunk/debian/upstream =================================================================== --- trunk/packages/proalign/trunk/debian/upstream (rev 0) +++ trunk/packages/proalign/trunk/debian/upstream 2012-05-24 12:42:36 UTC (rev 10989) @@ -0,0 +1,12 @@ +Reference: + Author: Ari Löytynoja and Michel C Milinkovitch + Title: A hidden Markov model for progressive multiple alignment + Journal: Bioinformatics + Year: 2003 + Volume: 19 + Number: 12 + Pages: 1505-13 + DOI: 10.1093/bioinformatics/btg193 + PMID: 12912831 + URL: http://bioinformatics.oxfordjournals.org/content/19/12/1505 + eprint: http://bioinformatics.oxfordjournals.org/content/19/12/1505.full.pdf+html Added: trunk/packages/proalign/trunk/debian/watch =================================================================== --- trunk/packages/proalign/trunk/debian/watch (rev 0) +++ trunk/packages/proalign/trunk/debian/watch 2012-05-24 12:42:36 UTC (rev 10989) @@ -0,0 +1,4 @@ +version=3 + +opts=dversionmangle=s/\.// \ + http://ueg.ulb.ac.be/ProAlign/download/src/proalign_(.+)\.tgz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
