Author: tille Date: 2012-05-28 15:54:58 +0000 (Mon, 28 May 2012) New Revision: 11044
Added: trunk/packages/clonalorigin/ trunk/packages/clonalorigin/trunk/ trunk/packages/clonalorigin/trunk/debian/ trunk/packages/clonalorigin/trunk/debian/changelog trunk/packages/clonalorigin/trunk/debian/compat trunk/packages/clonalorigin/trunk/debian/control trunk/packages/clonalorigin/trunk/debian/copyright trunk/packages/clonalorigin/trunk/debian/rules trunk/packages/clonalorigin/trunk/debian/upstream Log: Take over information from tasks file into machine readable packaging files Added: trunk/packages/clonalorigin/trunk/debian/changelog =================================================================== --- trunk/packages/clonalorigin/trunk/debian/changelog (rev 0) +++ trunk/packages/clonalorigin/trunk/debian/changelog 2012-05-28 15:54:58 UTC (rev 11044) @@ -0,0 +1,5 @@ +clonalorigin (0.0.20101011svn_r29-1) unstable; urgency=low + + * Initial release + + -- Andreas Tille <[email protected]> Mon, 28 May 2012 17:47:37 +0200 Added: trunk/packages/clonalorigin/trunk/debian/compat =================================================================== --- trunk/packages/clonalorigin/trunk/debian/compat (rev 0) +++ trunk/packages/clonalorigin/trunk/debian/compat 2012-05-28 15:54:58 UTC (rev 11044) @@ -0,0 +1 @@ +9 Added: trunk/packages/clonalorigin/trunk/debian/control =================================================================== --- trunk/packages/clonalorigin/trunk/debian/control (rev 0) +++ trunk/packages/clonalorigin/trunk/debian/control 2012-05-28 15:54:58 UTC (rev 11044) @@ -0,0 +1,26 @@ +Source: clonalorigin +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.3 +Homepage: http://code.google.com/p/clonalorigin/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/clonalorigin/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/clonalorigin/trunk/ + +Package: clonalorigin +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: inference of homologous recombination in bacteria using whole genome sequences + Bacteria, unlike us, can reproduce on their own. They do however have + mechanisms that transfer DNA between organisms, a process more formally + known as recombination. The mechanisms by which recombination takes + place have been studied extensively in the laboratory but much remains + to be understood concerning how, when and where recombination takes + place within natural populations of bacteria and how it helps them to + adapt to new environments. ClonalOrigin performs a comparative analysis + of the sequences of a sample of bacterial genomes in order to + reconstruct the recombination events that have taken place in their + ancestry. Added: trunk/packages/clonalorigin/trunk/debian/copyright =================================================================== --- trunk/packages/clonalorigin/trunk/debian/copyright (rev 0) +++ trunk/packages/clonalorigin/trunk/debian/copyright 2012-05-28 15:54:58 UTC (rev 11044) @@ -0,0 +1,11 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Contact: Xavier Didelot <[email protected]> +Source: http://code.google.com/p/clonalorigin/wiki/Download_And_Install_ClonalOrigin + +Files: * +Copyright: © 2008-2010 Xavier Didelot, Aaron Darling, et. al. +License: GPL-v3 + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: GPL-v3 Added: trunk/packages/clonalorigin/trunk/debian/rules =================================================================== --- trunk/packages/clonalorigin/trunk/debian/rules (rev 0) +++ trunk/packages/clonalorigin/trunk/debian/rules 2012-05-28 15:54:58 UTC (rev 11044) @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ Property changes on: trunk/packages/clonalorigin/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/clonalorigin/trunk/debian/upstream =================================================================== --- trunk/packages/clonalorigin/trunk/debian/upstream (rev 0) +++ trunk/packages/clonalorigin/trunk/debian/upstream 2012-05-28 15:54:58 UTC (rev 11044) @@ -0,0 +1,12 @@ +Reference: + Author: Xavier Didelot and Daniel Lawson and Aaron Darling and Daniel Falush + Title: Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences + Journal: Genetics + Year: 2010 + Volume: 186 + Number: 4 + Pages: 1435-1449 + DOI: 10.1534/genetics.110.120121 + PMID: 20923983 + URL: http://www.genetics.org/content/186/4/1435.abstract + eprint: http://www.genetics.org/content/186/4/1435.full.pdf+html _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
