Pierre Gruet pushed to branch master at Debian Med / drop-seq
Commits: 2a523755 by Pierre Gruet at 2023-08-14T15:38:55+02:00 Fixing the clean target - - - - - fe62a626 by Pierre Gruet at 2023-08-21T15:01:36+02:00 New upstream version 2.5.4+dfsg - - - - - 85691564 by Pierre Gruet at 2023-08-21T15:03:20+02:00 Update upstream source from tag 'upstream/2.5.4+dfsg' Update to upstream version '2.5.4+dfsg' with Debian dir 26f739889d94cb5625ac2daccb9e441cf248a43d - - - - - 94574002 by Pierre Gruet at 2023-08-21T15:05:34+02:00 Refreshing copyright years in d/copyright - - - - - f938d6ef by Pierre Gruet at 2023-08-21T15:07:59+02:00 Updating changelog - - - - - 0fe09bef by Pierre Gruet at 2023-08-21T16:19:35+02:00 Upload to unstable - - - - - 30 changed files: - debian/changelog - debian/copyright - debian/rules - public.iml - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java - src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java - src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java - src/java/org/broadinstitute/dropseqrna/annotation/ValidateReference.java - src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java - src/java/org/broadinstitute/dropseqrna/barnyard/Utils.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPInfoCollection.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileup.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapper.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapper2.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/DetectDoublets.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/GenotypeMatrix.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/VariantDataFactory.java - src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java - src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeqUtils.java - src/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysis.java - src/java/org/broadinstitute/dropseqrna/censusseq/RollCall.java - src/java/org/broadinstitute/dropseqrna/censusseq/SNPGenomicBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/metrics/BamTagHistogram.java - src/java/org/broadinstitute/dropseqrna/metrics/CountUnmatchedSampleIndices.java - + src/java/org/broadinstitute/dropseqrna/metrics/MetricsUtil.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/8887ed0e7c42eded3e10cd109c76d320c8434fc8...0fe09beff8b9249df11b37b45189a0229aa99048 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/8887ed0e7c42eded3e10cd109c76d320c8434fc8...0fe09beff8b9249df11b37b45189a0229aa99048 You're receiving this email because of your account on salsa.debian.org.
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