Pierre Gruet pushed to branch upstream at Debian Med / drop-seq
Commits: fe62a626 by Pierre Gruet at 2023-08-21T15:01:36+02:00 New upstream version 2.5.4+dfsg - - - - - 30 changed files: - public.iml - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java - src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java - src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java - src/java/org/broadinstitute/dropseqrna/annotation/ValidateReference.java - src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java - src/java/org/broadinstitute/dropseqrna/barnyard/Utils.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPInfoCollection.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileup.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapper.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapper2.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/DetectDoublets.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/GenotypeMatrix.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/multisample/VariantDataFactory.java - src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java - src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeqUtils.java - src/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysis.java - src/java/org/broadinstitute/dropseqrna/censusseq/RollCall.java - src/java/org/broadinstitute/dropseqrna/censusseq/SNPGenomicBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/metrics/BamTagHistogram.java - src/java/org/broadinstitute/dropseqrna/metrics/CountUnmatchedSampleIndices.java - + src/java/org/broadinstitute/dropseqrna/metrics/MetricsUtil.java - src/java/org/broadinstitute/dropseqrna/sbarro/BipartiteRabiesVirusCollapse.java - src/java/org/broadinstitute/dropseqrna/spermseq/metrics/duplicates/SpermSeqMarkDuplicates.java - src/java/org/broadinstitute/dropseqrna/utils/AbstractSplitBamClp.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/fe62a626a0e1bdddf5fd0d94bb8d90442510fdb3 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/fe62a626a0e1bdddf5fd0d94bb8d90442510fdb3 You're receiving this email because of your account on salsa.debian.org.
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