Author: tille Date: 2012-06-05 06:49:04 +0000 (Tue, 05 Jun 2012) New Revision: 11205
Added: trunk/packages/mugsy/ trunk/packages/mugsy/trunk/ trunk/packages/mugsy/trunk/debian/ trunk/packages/mugsy/trunk/debian/changelog trunk/packages/mugsy/trunk/debian/compat trunk/packages/mugsy/trunk/debian/control trunk/packages/mugsy/trunk/debian/copyright trunk/packages/mugsy/trunk/debian/rules trunk/packages/mugsy/trunk/debian/upstream Log: Turn information from task file about mugsy into machine readable packaging files Added: trunk/packages/mugsy/trunk/debian/changelog =================================================================== --- trunk/packages/mugsy/trunk/debian/changelog (rev 0) +++ trunk/packages/mugsy/trunk/debian/changelog 2012-06-05 06:49:04 UTC (rev 11205) @@ -0,0 +1,5 @@ +mugsy (1.2.3-2) UNRELEASED; urgency=low + + * Initial release + + -- Andreas Tille <[email protected]> Tue, 05 Jun 2012 08:40:58 +0200 Added: trunk/packages/mugsy/trunk/debian/compat =================================================================== --- trunk/packages/mugsy/trunk/debian/compat (rev 0) +++ trunk/packages/mugsy/trunk/debian/compat 2012-06-05 06:49:04 UTC (rev 11205) @@ -0,0 +1 @@ +9 Added: trunk/packages/mugsy/trunk/debian/control =================================================================== --- trunk/packages/mugsy/trunk/debian/control (rev 0) +++ trunk/packages/mugsy/trunk/debian/control 2012-06-05 06:49:04 UTC (rev 11205) @@ -0,0 +1,21 @@ +Source: mugsy +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.3 +Homepage: http://mugsy.sourceforge.net/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mugsy/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mugsy/trunk/ + +Package: mugsy +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: multiple whole genome aligner + Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise + alignment, a custom graph based segmentation procedure for identifying + collinear regions, and the segment-based progressive multiple alignment + strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form + of multi-FASTA files and does not require a reference genome. Added: trunk/packages/mugsy/trunk/debian/copyright =================================================================== --- trunk/packages/mugsy/trunk/debian/copyright (rev 0) +++ trunk/packages/mugsy/trunk/debian/copyright 2012-06-05 06:49:04 UTC (rev 11205) @@ -0,0 +1,11 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: Mugsy +Source: http://sourceforge.net/projects/mugsy/files/ + +Files: * +Copyright: © 2010-2011 S. V. Angiuoli +License: Artistic-2.0 + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: Artistic-2.0 Added: trunk/packages/mugsy/trunk/debian/rules =================================================================== --- trunk/packages/mugsy/trunk/debian/rules (rev 0) +++ trunk/packages/mugsy/trunk/debian/rules 2012-06-05 06:49:04 UTC (rev 11205) @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ Property changes on: trunk/packages/mugsy/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/mugsy/trunk/debian/upstream =================================================================== --- trunk/packages/mugsy/trunk/debian/upstream (rev 0) +++ trunk/packages/mugsy/trunk/debian/upstream 2012-06-05 06:49:04 UTC (rev 11205) @@ -0,0 +1,12 @@ +Reference: + Author: Samuel V Angiuoli and Steven L Salzberg + Title: "Mugsy: fast multiple alignment of closely related whole genomes" + Journal: Bioinformatics + Year: 2011 + Volume: 27 + Number: 3 + Pages: 334-42 + DOI: 10.1093/bioinformatics/btq665 + PMID: 21148543 + URL: http://bioinformatics.oxfordjournals.org/content/27/3/334 + eprint: http://bioinformatics.oxfordjournals.org/content/27/3/334.full.pdf+html _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
