Author: christophgil-guest Date: 2012-06-07 21:24:44 +0000 (Thu, 07 Jun 2012) New Revision: 11273
Modified: trunk/packages/strap/trunk/debian/Sed.sh trunk/packages/strap/trunk/debian/control trunk/packages/strap/trunk/debian/rules trunk/packages/strap/trunk/debian/strap.install Log: copying two files from latex-extra not int strap.install but in rules Modified: trunk/packages/strap/trunk/debian/Sed.sh =================================================================== --- trunk/packages/strap/trunk/debian/Sed.sh 2012-06-07 19:57:38 UTC (rev 11272) +++ trunk/packages/strap/trunk/debian/Sed.sh 2012-06-07 21:24:44 UTC (rev 11273) @@ -1,3 +1,7 @@ + +# This script is used to generate man pages and shell scripts from a template +# It is not part of the package build process. + cat bin/toXXX.sh | sed 's|-toXXX|-toFasta|1' > bin/strap_util_toFasta cat bin/toXXX.sh | sed 's|-toXXX|-toMultipleFasta|1' > bin/strap_util_toMultipleFasta cat bin/toXXX.sh | sed 's|-toXXX|-toClustal|1' > bin/strap_util_toClustal Modified: trunk/packages/strap/trunk/debian/control =================================================================== --- trunk/packages/strap/trunk/debian/control 2012-06-07 19:57:38 UTC (rev 11272) +++ trunk/packages/strap/trunk/debian/control 2012-06-07 21:24:44 UTC (rev 11273) @@ -15,19 +15,19 @@ Recommends: muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align Suggests: Enhances: clustalw, tm-align, pymol, mustang, muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align -Description: Compute and edit Sequence and structure alignments of - proteins. Strap is a work-bench for proteins. It can compute - multiple sequence alignments and structure alignments and it is used - for structure/function prediction and database searching. Modern - standard tools can be used in an intuitive graphical user interface - which follows the paradigms of modern user interfaces such as drag'n - drop. The sequence alignment view and the 3D-visualization (Pymol, - Jmol or OpenAstex) are tightly linked. Information can be attached - to residue selections such as free text notes as well as 3D and 1D - display styles. Figures can be created in publication quality. The - alignment can be exported in several formats: PDF, MS-Word, HTML, - Jalview, Multiple-Fasta, ClustalW, MSF, HSSP - see - http://3d-alignment.eu/ for details. Interactive alignments can be - published in Web-pages. For this purpose, HTML code is generated - automatically. Strap is scriptable and can be used by programs and - web-services to display sequence alignments and 3D-superpositions. +Description: Strap is a work-bench for proteins. It can be used to + display, edit and compute multiple sequence alignments, structure + alignments and 3D-structure superpositions. It aids structure / + function prediction and database searching. Modern standard tools + can be used in an intuitive graphical user interface which follows + the paradigms of modern user interfaces such as drag'n drop. The + sequence alignment view and the Pymol 3D-visualization are tightly + linked. Information can be attached to residue selections such as + free text notes as well as 3D and 1D display styles. Figures can be + created in publication quality. The alignment can be exported in + several formats: PDF, MS-Word, HTML, Jalview, Multiple-Fasta, + ClustalW, MSF, HSSP - see http://3d-alignment.eu/ for details. + Interactive alignments can be published in Web-pages. For this + purpose, HTML code is generated automatically. Strap is scriptable + and can be used by programs and web-services to display sequence + alignments and 3D-superpositions. Modified: trunk/packages/strap/trunk/debian/rules =================================================================== --- trunk/packages/strap/trunk/debian/rules 2012-06-07 19:57:38 UTC (rev 11272) +++ trunk/packages/strap/trunk/debian/rules 2012-06-07 21:24:44 UTC (rev 11273) @@ -7,4 +7,11 @@ %: dh $@ +override_dh_auto_build: + # Only two small sty files of the huge package texlive-latex-extra are required in Strap + # Include these two files such that texlive-latex-extra can be ommitted + mkdir -p usr/lib/strap + cp /usr/share/texmf-texlive/tex/latex/texshade/texshade.sty usr/lib/strap + cp /usr/share/texmf-texlive/tex/latex/vmargin/vmargin.sty usr/lib/strap + Modified: trunk/packages/strap/trunk/debian/strap.install =================================================================== --- trunk/packages/strap/trunk/debian/strap.install 2012-06-07 19:57:38 UTC (rev 11272) +++ trunk/packages/strap/trunk/debian/strap.install 2012-06-07 21:24:44 UTC (rev 11273) @@ -1,7 +1,6 @@ debian/bin/strap_util_toFasta usr/bin debian/bin/strap_util_toMultipleFasta usr/bin debian/bin/strap_util_toClustal usr/bin -/usr/share/texmf-texlive/tex/latex/texshade/texshade.sty usr/lib/strap -/usr/share/texmf-texlive/tex/latex/vmargin/vmargin.sty usr/lib/strap + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
