Author: christophgil-guest Date: 2012-06-07 21:25:57 +0000 (Thu, 07 Jun 2012) New Revision: 11274
Removed: trunk/packages/strap-base/trunk/debian/compileStrap.sh Modified: trunk/packages/strap-base/trunk/debian/control trunk/packages/strap-base/trunk/debian/copyright trunk/packages/strap-base/trunk/debian/rules Log: Improved wording in debian/control; removed unused file Deleted: trunk/packages/strap-base/trunk/debian/compileStrap.sh =================================================================== --- trunk/packages/strap-base/trunk/debian/compileStrap.sh 2012-06-07 21:24:44 UTC (rev 11273) +++ trunk/packages/strap-base/trunk/debian/compileStrap.sh 2012-06-07 21:25:57 UTC (rev 11274) @@ -1,33 +0,0 @@ -#!/bin/bash - - -mkdir -p $SRC_TMP - -CP=.:$TARBALLS/compilationDependencies.jar: -# Note compilationDependencies.jar contains those classes that are required for compilation but not for runtime. -# Conditional compilation does not work properly with javac. - -for jar in javatar activation commons-codec commons-httpclient commons-logging httpclient httpclient httpcore httpmime; do - jf=/usr/share/java/$jar.jar - [ -f $jf ] || echo Jar-file not found $jf - CP=$CP:$jf -done - -echo Classpath $CP -echo -cd $SRC_TMP -tar -xzf $TARBALLS/strap_1.orig.tar.gz -cd strap-$VERSION -echo PWD=$PWD -SKIP='/metannogen/\|Superimpose_LajollaProtein.java\|ChJv.java\|Flavine.java\|ChAquaScrollBarUI\|StrapMacApplicationListener' -SRC_FILES=$(find . -name '[A-Z]*.java' | tr ' ' '\n' | grep -v "$SKIP") - -javac -cp $CP $SRC_FILES -NEW_JAR=$TARBALLS/strap-$VERSION.1.jar -jar -cf $NEW_JAR charite org/apache -echo NEW_JAR: $NEW_JAR - - - - - Modified: trunk/packages/strap-base/trunk/debian/control =================================================================== --- trunk/packages/strap-base/trunk/debian/control 2012-06-07 21:24:44 UTC (rev 11273) +++ trunk/packages/strap-base/trunk/debian/control 2012-06-07 21:25:57 UTC (rev 11274) @@ -16,13 +16,12 @@ Suggests: strap Enhances: Description: Minimal environment for the bioinformatics tool Strap for - aligning proteins by sequence and/or structure. This package is - sufficient to run /usr/bin/strap-protein-alignment. But external - programs and libraries enhancing the functionality of Strap such as - 3D-visualization, automated 3D-superposition, 3D-alignment and - sequence alignment are missing. End users should therefore install - the debian package "strap" which links all required packages. Other - software using Strap as a viewer for proteins, alignments and - 3D-superpositions may not need the full spectrum of external - libraries and may therefore refer to strap-base. + aligning proteins by sequence and/or 3D-structure. This package is + sufficient to run /usr/bin/strap-protein-alignment. But required + debian packages for 3D-visualization, automated sequence alignment + and 3D-superposition are not installed automatically. End users + should therefore install the debian package strap which links these + required packages. The strap-base package may be a dependency of + another debian package if used as a viewer for proteins, alignments + and 3D-superpositions. Modified: trunk/packages/strap-base/trunk/debian/copyright =================================================================== --- trunk/packages/strap-base/trunk/debian/copyright 2012-06-07 21:24:44 UTC (rev 11273) +++ trunk/packages/strap-base/trunk/debian/copyright 2012-06-07 21:25:57 UTC (rev 11274) @@ -27,7 +27,7 @@ Copyright: © 2011 Christoph Gille License: GPL-3 # ******************************************************************************** -Files: remote.png color.gif tools.png pencil.png scissor.png hotplug.png pdf.png 3d.png hotplug.png plug.png Loaded from +Files: browser.png remote.png color.gif tools.png pencil.png scissor.png hotplug.png pdf.png 3d.png hotplug.png plug.png Loaded from Source: http://www.phoca.cz/demo/gallery-categories/category/22-nuvola-icons License: LGPL-2.1 Comment: On Debian systems, the complete text of the Apache license can be found in '/usr/share/common-licenses/LGPL-2.1' @@ -36,9 +36,9 @@ Source: http://icone.goldenweb.it/index_file/l/en/d2/computer/default.html License: Citation from web site "The icons stored within our database are free and downloadable in .ico, .bmp, or .gif format. .... " # # ******************************************************************************** -Files: big_ wikipedia.jpg firefox.png jmol.jpg ncbi*.jpg pfamShort.png pymol.gif pubmed*.png prodom.png uniprot.gif +Files: Logos *wikipedia.jpg ncbi*.jpg pfamShort.png pymol.gif pubmed*.png prodom.png uniprot.gif Source: The respective project pages -License: These are free soft ware projects +License: These are academic projects # ******************************************************************************** Files: winzip.gif Source: http://www.winzip.com/graphics/winzip_icon_xp.gif Modified: trunk/packages/strap-base/trunk/debian/rules =================================================================== --- trunk/packages/strap-base/trunk/debian/rules 2012-06-07 21:24:44 UTC (rev 11273) +++ trunk/packages/strap-base/trunk/debian/rules 2012-06-07 21:25:57 UTC (rev 11274) @@ -8,20 +8,20 @@ %: dh $@ -#SRC_TMP := $(shell mktemp --tmpdir --directory strap-base-build.XXXXXXXXXX) -SRC_TMP := $(HOME)/tmp/build_strap-base +SRC_TMP := $(shell mktemp --tmpdir --directory strap-base-build.XXXXXXXXXX) +#SRC_TMP := $(HOME)/tmp/build_strap-base TARBALLS := $(CURDIR)/../tarballs ORIG_TAR=$(TARBALLS)/strap-base_$(VERSION).orig.tar.gz MANFILE1 := ~/java/charite/christo/strap/strap-protein-alignment.1 - override_dh_installdocs: dh_installdocs override_dh_auto_build: - test -f $(MANFILE1) && cp $(MANFILE1) debian/strap-protein-alignment.1 + test -f $(MANFILE1) && cp -u $(MANFILE1) debian/strap-protein-alignment.1 cd $(SRC_TMP) && tar -xzf $(ORIG_TAR) - # Native program to manage GUI frames by frame title. It provides always-on-top, iconization, to-front etc. + # Native program to manage GUI frames by frame title. + #It provides always-on-top, iconization, to-front etc. cd $(SRC_TMP)/src && cc -lm -lX11 -o $(CURDIR)/nativeTools_unix2 nativeTools_unix2.c cd $(SRC_TMP)/src && find . -name "*.java" > ../javaFiles.txt cd $(SRC_TMP)/src && javac -O -cp @$(SRC_TMP)/classpath.txt @../javaFiles.txt _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
