Andreas Tille pushed to branch master at Debian Med / python-skbio
Commits: 4ca6bc43 by Andreas Tille at 2024-01-26T13:39:52+01:00 Fix cython issue - - - - - 6b6382c1 by Andreas Tille at 2024-01-26T13:54:53+01:00 Upload to unstable - - - - - 7 changed files: - debian/changelog - + debian/patches/cython3.patch - debian/patches/series - − skbio/alignment/_ssw_wrapper.c - − skbio/diversity/_phylogenetic.c - − skbio/metadata/_intersection.c - − skbio/stats/__subsample.c Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +python-skbio (0.5.9-3) unstable; urgency=medium + + * Fix cython issue + Closes: #1056047 + + -- Andreas Tille <[email protected]> Fri, 26 Jan 2024 13:44:30 +0100 + python-skbio (0.5.9-2) unstable; urgency=medium * Add loong64 support ===================================== debian/patches/cython3.patch ===================================== @@ -0,0 +1,16 @@ +Description: Fix cython issue +Bug-Debian: https://bugs.debian.org/1056047 +Author: Andreas Tille <[email protected]> +Last-Update: Fri, 26 Jan 2024 13:38:38 +0100 + +--- a/skbio/alignment/_ssw_wrapper.pyx ++++ b/skbio/alignment/_ssw_wrapper.pyx +@@ -581,7 +581,7 @@ cdef class StripedSmithWaterman: + # Set up our mask_length + # Mask is recommended to be max(query_sequence/2, 15) + if mask_auto: +- self.mask_length = len(query_sequence) // 2 ++ self.mask_length = int(len(query_sequence) // 2) + if self.mask_length < mask_length: + self.mask_length = mask_length + else: ===================================== debian/patches/series ===================================== @@ -7,3 +7,4 @@ local_inventory modify-test.patch numpy-1.24.patch python3.12-xfail-tests.patch +cython3.patch ===================================== skbio/alignment/_ssw_wrapper.c deleted ===================================== The diff for this file was not included because it is too large. ===================================== skbio/diversity/_phylogenetic.c deleted ===================================== The diff for this file was not included because it is too large. ===================================== skbio/metadata/_intersection.c deleted ===================================== The diff for this file was not included because it is too large. ===================================== skbio/stats/__subsample.c deleted ===================================== The diff for this file was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/76da8f3a033222d9d67a3f34570a432d4cbc541d...6b6382c1bab2b3d06ab70c89f16b8f99c736fdca -- View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/76da8f3a033222d9d67a3f34570a432d4cbc541d...6b6382c1bab2b3d06ab70c89f16b8f99c736fdca You're receiving this email because of your account on salsa.debian.org.
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