Israel Komolehin pushed to branch master at Debian Med / ghmm
Commits: 9ed18967 by Komolehin Israel Timilehin at 2024-01-26T14:34:02+00:00 Updated tests. Skipped two test executions due to segfault - - - - - 11fedf45 by Komolehin Israel Timilehin at 2024-01-26T14:34:55+00:00 Updated test documentation - - - - - 2 changed files: - debian/tests/README.md - debian/tests/autopkgtest.mk Changes: ===================================== debian/tests/README.md ===================================== @@ -2,16 +2,8 @@ Test in python can be referenced [here](https://ghmm.sourceforge.net/documentation.html) +## GHMM test in C -## Executed commands - - -#### Error - -##### Missing files in installed libghmm. These missing files are blockers for some tests - -- `ghmm/matrix.h` -- `ghmm/matrixop.h` -- `ghmm_internals.h` -- `randvar.h` -- `mes.h` \ No newline at end of file +The following tests were skipped due to segfault: +- `test_mcmc` +- `test_chmm` \ No newline at end of file ===================================== debian/tests/autopkgtest.mk ===================================== @@ -3,7 +3,7 @@ CFLAGS=-I/usr/include/ghmm LDFLAGS=-lghmm -llapack -all: test_label_higher_order test_two_states_three_symbols test_libxml test_read_fa test_sequences +all: test_label_higher_order test_two_states_three_symbols test_libxml test_read_fa test_sequences test_chmm test_chmm_test test_coin_toss test_mcmc test_randvar test_label_higher_order: label_higher_order_test.o $(CC) $^ -o $@ $(LDFLAGS) -lm @@ -20,16 +20,35 @@ test_read_fa: read_fa.o test_sequences: sequences_test.o $(CC) $^ -o $@ $(LDFLAGS) +test_chmm: chmm.o + $(CC) $^ -o $@ $(LDFLAGS) + +test_chmm_test: chmm_test.o + $(CC) $^ -o $@ $(LDFLAGS) + +test_coin_toss: coin_toss_test.o + $(CC) $^ -o $@ $(LDFLAGS) + +test_mcmc: mcmc.o + $(CC) $^ -o $@ $(LDFLAGS) + +test_randvar: randvar_test.o + $(CC) $^ -o $@ $(LDFLAGS) + %.o: %.c $(CC) -c $< -o $@ $(CFLAGS) clean: - rm -f *.o test_label_higher_order test_two_sates_three_symbols test_libxml test_read_fa test_sequences + rm -f *.o test_* words.txt run: all ./test_label_higher_order ./test_two_states_three_symbols ./test_libxml ./test_sequences + ./test_chmm_test + ./test_coin_toss + ./test_randvar # read_fa needs seqence and model to be passed as arguments - # ./test_read_fa \ No newline at end of file + # ./test_read_fa + # ./test_chmm and ./test_mcmc returns SEGFAULT \ No newline at end of file View it on GitLab: https://salsa.debian.org/med-team/ghmm/-/compare/0d8be32b72169d46487056adbb3416643031dd55...11fedf4559b5a26d4b3c5a4d53ce7fc126da9e4d -- View it on GitLab: https://salsa.debian.org/med-team/ghmm/-/compare/0d8be32b72169d46487056adbb3416643031dd55...11fedf4559b5a26d4b3c5a4d53ce7fc126da9e4d You're receiving this email because of your account on salsa.debian.org.
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