Author: tille Date: 2012-06-14 12:57:49 +0000 (Thu, 14 Jun 2012) New Revision: 11334
Added: trunk/packages/mpsqed/ trunk/packages/mpsqed/trunk/ trunk/packages/mpsqed/trunk/debian/ trunk/packages/mpsqed/trunk/debian/changelog trunk/packages/mpsqed/trunk/debian/compat trunk/packages/mpsqed/trunk/debian/control trunk/packages/mpsqed/trunk/debian/copyright trunk/packages/mpsqed/trunk/debian/rules trunk/packages/mpsqed/trunk/debian/upstream trunk/packages/mpsqed/trunk/debian/watch Log: Inject packaging for mpsqed Added: trunk/packages/mpsqed/trunk/debian/changelog =================================================================== --- trunk/packages/mpsqed/trunk/debian/changelog (rev 0) +++ trunk/packages/mpsqed/trunk/debian/changelog 2012-06-14 12:57:49 UTC (rev 11334) @@ -0,0 +1,5 @@ +mpsqed (0.9.3-1) unstable; urgency=low + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Thu, 14 Jun 2012 14:21:03 +0200 Added: trunk/packages/mpsqed/trunk/debian/compat =================================================================== --- trunk/packages/mpsqed/trunk/debian/compat (rev 0) +++ trunk/packages/mpsqed/trunk/debian/compat 2012-06-14 12:57:49 UTC (rev 11334) @@ -0,0 +1 @@ +9 Added: trunk/packages/mpsqed/trunk/debian/control =================================================================== --- trunk/packages/mpsqed/trunk/debian/control (rev 0) +++ trunk/packages/mpsqed/trunk/debian/control 2012-06-14 12:57:49 UTC (rev 11334) @@ -0,0 +1,27 @@ +Source: mpsqed +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.3 +Homepage: http://sourceforge.net/projects/mpsqed/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mpsqed/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mpsqed/trunk/ + +Package: mpsqed +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: alignment editor and multiplex pyrosequencing assay designer + Molecular-based diagnostic assays are the gold standard for infectious + diseases today, since they allow a rapid and sensitive identification + and typing of various pathogens. While PCR can be designed to be + specific for a certain pathogen, a subsequent sequence analysis is + frequently required for confirmation or typing. The design of + appropriate PCR-based assays is a complex task, especially when + conserved discriminating polymorphisms are rare or if the number of + types which need to be differentiated is high. One extremely useful but + underused method for this purpose is the multiplex pyrosequencing + technique. mPSQed is a program developed at the Robert Koch Institute + and targeted at facilitating the creation of such assays. Added: trunk/packages/mpsqed/trunk/debian/copyright =================================================================== --- trunk/packages/mpsqed/trunk/debian/copyright (rev 0) +++ trunk/packages/mpsqed/trunk/debian/copyright 2012-06-14 12:57:49 UTC (rev 11334) @@ -0,0 +1,13 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: mPSQed +Upstream-Contact: [email protected] +Source: http://sourceforge.net/projects/mpsqed/files/ + +Files: * +Copyright: © 2011-2012 Piotr Wojtek Dabrowski <[email protected]> + Andreas Nitsche <[email protected]> +License: to_be_clarified + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: LGPL-2+ Added: trunk/packages/mpsqed/trunk/debian/rules =================================================================== --- trunk/packages/mpsqed/trunk/debian/rules (rev 0) +++ trunk/packages/mpsqed/trunk/debian/rules 2012-06-14 12:57:49 UTC (rev 11334) @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ Property changes on: trunk/packages/mpsqed/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/mpsqed/trunk/debian/upstream =================================================================== --- trunk/packages/mpsqed/trunk/debian/upstream (rev 0) +++ trunk/packages/mpsqed/trunk/debian/upstream 2012-06-14 12:57:49 UTC (rev 11334) @@ -0,0 +1,13 @@ +Reference: + Author: Piotr Wojtek Dabrowski and Andreas Nitsche + Title: "mPSQed: A Software for the Design of Multiplex Pyrosequencing Assays" + Journal: PLoS One + Year: 2012 + Volume: 7 + Number: 6 + Pages: e38140 + DOI: 10.1371/journal.pone.0038140 + PMID: 22675516 + URL: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0038140 + eprint: http://www.plosone.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0038140&representation=PDF + Added: trunk/packages/mpsqed/trunk/debian/watch =================================================================== --- trunk/packages/mpsqed/trunk/debian/watch (rev 0) +++ trunk/packages/mpsqed/trunk/debian/watch 2012-06-14 12:57:49 UTC (rev 11334) @@ -0,0 +1,2 @@ +version=3 +http://sf.net/mpsqed/mPSQed\.(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
