Pierre Gruet pushed to branch upstream at Debian Med / drop-seq
Commits: fc203848 by Pierre Gruet at 2024-09-29T21:45:09+02:00 New upstream version 3.0.2+dfsg - - - - - 30 changed files: - README.md - + doc/Donor_Assignment_Computational_Cookbook.pdf - dropseq/build.gradle.kts - − gradle/wrapper/gradle-wrapper.jar - − gradle/wrapper/gradle-wrapper.properties - src/R/packages/DropSeq.dropulation/DESCRIPTION - src/R/packages/DropSeq.dropulation/NAMESPACE - src/R/packages/DropSeq.dropulation/R/DonorAssignmentStandardAnalysis.R - src/R/packages/DropSeq.dropulation/README.md - src/R/packages/DropSeq.utilities/DESCRIPTION - src/build/make_wrapper_scripts.sh - src/build/public_clp_template.sh - src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java - src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java - src/java/org/broadinstitute/dropseqrna/barnyard/MarkChimericReads.java - src/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscripts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/FilterReadsByUMISupport.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollection.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/BiasedBarcodeCollectionFactory.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/CorrectAndSplitScrnaReadPairs.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java - src/java/org/broadinstitute/dropseqrna/eqtl/CreateMetaCells.java - src/java/org/broadinstitute/dropseqrna/utils/FilterBam.java - src/java/org/broadinstitute/dropseqrna/utils/IteratorOfIterators.java - src/java/org/broadinstitute/dropseqrna/utils/editdistance/DetectBeadSubstitutionErrors.java - src/java/org/broadinstitute/dropseqrna/utils/editdistance/MapBarcodesByEditDistance.java - + src/java/org/broadinstitute/dropseqrna/utils/readiterators/STARSoloChimericReadFilteringIterator.java - src/java/org/broadinstitute/dropseqrna/utils/readiterators/UMIIterator.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/fc203848b5b74713f45b9d52c7e40f902eb2488e -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/fc203848b5b74713f45b9d52c7e40f902eb2488e You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
