Pierre Gruet pushed to branch master at Debian Med / drop-seq
Commits: dfa238cd by Pierre Gruet at 2024-09-29T21:41:11+02:00 Refreshing the list of files to remove when repacking - - - - - fc203848 by Pierre Gruet at 2024-09-29T21:45:09+02:00 New upstream version 3.0.2+dfsg - - - - - ad52d5ee by Pierre Gruet at 2024-09-29T21:47:04+02:00 Update upstream source from tag 'upstream/3.0.2+dfsg' Update to upstream version '3.0.2+dfsg' with Debian dir b2f248be4ba49293287ed26f161d2ca5dc7f0fa5 - - - - - b669bc4c by Pierre Gruet at 2024-09-29T21:58:05+02:00 Refreshing patches - - - - - 25d41b38 by Pierre Gruet at 2024-09-29T21:59:43+02:00 Updating changelog - - - - - 9a0df402 by Pierre Gruet at 2024-09-29T23:07:26+02:00 Upload to unstable - - - - - 30 changed files: - README.md - debian/changelog - debian/copyright - debian/patches/link_excluded_file.patch - debian/patches/openjdk_21_syntax.patch - debian/patches/paths_in_scripts.patch - debian/patches/put_defs_sh_out_of_path.patch - + doc/Donor_Assignment_Computational_Cookbook.pdf - dropseq/build.gradle.kts - − gradle/wrapper/gradle-wrapper.jar - − gradle/wrapper/gradle-wrapper.properties - src/R/packages/DropSeq.dropulation/DESCRIPTION - src/R/packages/DropSeq.dropulation/NAMESPACE - src/R/packages/DropSeq.dropulation/R/DonorAssignmentStandardAnalysis.R - src/R/packages/DropSeq.dropulation/README.md - src/R/packages/DropSeq.utilities/DESCRIPTION - src/build/make_wrapper_scripts.sh - src/build/public_clp_template.sh - src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java - src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java - src/java/org/broadinstitute/dropseqrna/barnyard/MarkChimericReads.java - src/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscripts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/FilterReadsByUMISupport.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalexpression/UMICollection.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/BiasedBarcodeCollectionFactory.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/CorrectAndSplitScrnaReadPairs.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java - src/java/org/broadinstitute/dropseqrna/eqtl/CreateMetaCells.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/551ad6d9b69a3deb3f182479d6c48d0325595b45...9a0df4025fb81e5d3b3ae0e17e79711359e276c5 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/551ad6d9b69a3deb3f182479d6c48d0325595b45...9a0df4025fb81e5d3b3ae0e17e79711359e276c5 You're receiving this email because of your account on salsa.debian.org.
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