Michael R. Crusoe pushed to branch master at Debian Med / python-skbio
Commits: 2adc8e92 by Michael R. Crusoe at 2025-09-02T16:42:25+02:00 New upstream version 0.6.3 - - - - - 803d0d0b by Michael R. Crusoe at 2025-09-02T16:42:39+02:00 Update upstream source from tag 'upstream/0.6.3' Update to upstream version '0.6.3' with Debian dir 05841520975d4919d681cbd2c308c73093bd4a12 - - - - - 3b16ca72 by Michael R. Crusoe at 2025-09-02T16:43:15+02:00 New upstream release. - - - - - ce8427dc by Michael R. Crusoe at 2025-09-02T16:43:28+02:00 Standards-Version: 4.7.2 (routine-update) - - - - - b01ba0af by Michael R. Crusoe at 2025-09-02T16:44:14+02:00 d/control: reformat, remove unneeded versioned dependency information for scipy. - - - - - 3bb007d6 by Michael R. Crusoe at 2025-09-02T17:17:00+02:00 Refreshed patches, added additional -doc dependencies. Removed two patches applied upstream. - - - - - d05eb763 by Michael R. Crusoe at 2025-09-02T18:17:30+02:00 Add missing build dependency on python3-numpy-dev for command dh_numpy3. Changes-By: lintian-brush Fixes: lintian: missing-build-dependency-for-dh_-command See-also: https://lintian.debian.org/tags/missing-build-dependency-for-dh_-command.html - - - - - 8ba5473b by Michael R. Crusoe at 2025-09-02T18:17:56+02:00 Set upstream metadata fields: Registry. Changes-By: lintian-brush - - - - - b0183edf by Michael R. Crusoe at 2025-09-02T18:17:57+02:00 d/rules: set MPLCONFIGDIR while building the docs - - - - - 20db5a84 by Michael R. Crusoe at 2025-09-02T18:17:57+02:00 d/control: additional docs dependency: python3-sphinx-sitemap - - - - - 022908af by Michael R. Crusoe at 2025-09-02T18:17:57+02:00 d/rules: use the skbio.test wrapper for pytest. - - - - - d0228a36 by Michael R. Crusoe at 2025-09-02T18:58:35+02:00 Fixed some lintian overrides syntax - - - - - 5710bfe3 by Michael R. Crusoe at 2025-09-02T18:58:35+02:00 Added patch to disable use of Google analytics for the docs. - - - - - 37e759ba by Michael R. Crusoe at 2025-09-02T18:58:35+02:00 d/patches/no_privacy_breach_logo.patch: fix metadata - - - - - ffe4cda6 by Michael R. Crusoe at 2025-09-02T19:41:42+02:00 upload to unstable - - - - - 151 changed files: - .coveragerc - .github/workflows/ci.yml - .github/workflows/release.yml - .github/workflows/website.yml - .pre-commit-config.yaml - CHANGELOG.md - README.rst - ci/aarch64.conda_requirements.txt - ci/conda_requirements.txt - ci/requirements.doc.txt - debian/changelog - debian/control - debian/patches/0002-use-libsww-as-library-not-embedded-src.patch - − debian/patches/0007-Fix-cython-segmentation-error-2090.patch - − debian/patches/45127698e270024bacb670cdd0bd2e4850104b6f.patch - debian/patches/docs-no-version-switch - debian/patches/local_inventory - debian/patches/mathjax-path - debian/patches/no_privacy_breach_logo.patch - + debian/patches/privacy - debian/patches/series - debian/python3-skbio.lintian-overrides - debian/rules - debian/upstream/metadata - + doc/editmap.py - + doc/metatag.py - + doc/source/_templates/TreeNode.rst - doc/source/_templates/autosummary/class.rst - + doc/source/_templates/namedtuple.rst - doc/source/alignment.rst - + doc/source/autoinherit.py - doc/source/conf.py - doc/source/diversity.rst - doc/source/embedding.rst - doc/source/index.rst - doc/source/io.rst - doc/source/metadata.rst - doc/source/sequence.rst - doc/source/stats.rst - doc/source/table.rst - doc/source/tree.rst - doc/source/util.rst - doc/source/workflow.rst - pyproject.toml - setup.py - simde-sse2.h - skbio/__init__.py - skbio/alignment/_pairwise.py - skbio/alignment/_tabular_msa.py - skbio/diversity/__init__.py - skbio/diversity/_driver.py - skbio/diversity/_util.py - skbio/diversity/alpha/__init__.py - skbio/diversity/alpha/_base.py - skbio/diversity/alpha/_lladser.py - skbio/diversity/alpha/_pd.py - skbio/diversity/alpha/tests/test_base.py - skbio/diversity/alpha/tests/test_lladser.py - skbio/diversity/beta/_unifrac.py - skbio/diversity/tests/test_driver.py - skbio/diversity/tests/test_util.py - skbio/embedding/__init__.py - skbio/embedding/_embedding.py - skbio/io/__init__.py - skbio/io/_iosources.py - skbio/io/format/blast6.py - skbio/io/format/blast7.py - skbio/io/format/embed.py - skbio/io/format/fasta.py - skbio/io/format/taxdump.py - + skbio/io/format/tests/data/fasta_multi_seq_spaces - + skbio/io/format/tests/data/pdb_hits.txt - + skbio/io/format/tests/data/tiny_embedding_file.npz - skbio/io/format/tests/test_embed.py - skbio/io/format/tests/test_fasta.py - skbio/io/registry.py - skbio/io/tests/test_iosources.py - skbio/io/tests/test_registry.py - skbio/metadata/__init__.py - skbio/metadata/_intersection.pyx - skbio/metadata/_interval.py - skbio/metadata/_metadata.py - skbio/sequence/__init__.py - skbio/sequence/_dna.py - skbio/sequence/_genetic_code.py - skbio/sequence/_grammared_sequence.py - skbio/sequence/_protein.py - skbio/sequence/_rna.py - skbio/sequence/_sequence.py - skbio/sequence/tests/test_sequence.py - skbio/stats/_subsample.py - skbio/stats/composition.py - skbio/stats/distance/_anosim.py - skbio/stats/distance/_base.py - skbio/stats/distance/_mantel.py - skbio/stats/distance/_permanova.py - skbio/stats/distance/_permdisp.py - skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt - skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt - skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt - skbio/stats/distance/tests/test_anosim.py - skbio/stats/distance/tests/test_base.py - skbio/stats/distance/tests/test_mantel.py - skbio/stats/distance/tests/test_permanova.py - skbio/stats/distance/tests/test_permdisp.py - skbio/stats/evolve/_hommola.py - skbio/stats/evolve/tests/test_hommola.py - skbio/stats/ordination/_correspondence_analysis.py - skbio/stats/ordination/_ordination_results.py - skbio/stats/ordination/_principal_coordinate_analysis.py - skbio/stats/ordination/_redundancy_analysis.py - skbio/stats/ordination/tests/test_principal_coordinate_analysis.py - skbio/stats/ordination/tests/test_redundancy_analysis.py - skbio/stats/power.py - skbio/stats/tests/test_composition.py - skbio/stats/tests/test_power.py - skbio/stats/tests/test_subsample.py - skbio/table/_base.py - skbio/tree/__init__.py - + skbio/tree/_c_me.pyx - + skbio/tree/_c_nj.pyx - + skbio/tree/_compare.py - skbio/tree/_majority_rule.py - + skbio/tree/_me.py - skbio/tree/_nj.py - skbio/tree/_tree.py - + skbio/tree/_upgma.py - + skbio/tree/_utils.py - + skbio/tree/tests/test_compare.py - skbio/tree/tests/test_majority_rule.py - + skbio/tree/tests/test_me.py - skbio/tree/tests/test_nj.py - skbio/tree/tests/test_tree.py - + skbio/tree/tests/test_upgma.py - skbio/util/__init__.py - skbio/util/_decorator.py - + skbio/util/_docstring.py - skbio/util/_misc.py - skbio/util/_testing.py - skbio/util/_warning.py - skbio/util/tests/test_decorator.py - + skbio/util/tests/test_docstring.py - skbio/util/tests/test_misc.py - + skbio/util/tests/test_warning.py - web/.exclude - web/conf.py - web/devdoc/release.rst - web/index.rst - web/install.rst - web/learn.rst - web/versions.json The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/88786671311b6e14988e34cccfffdf39eda2465f...ffe4cda60081e362ba75b8e50f6ec0ac88e47d88 -- View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/88786671311b6e14988e34cccfffdf39eda2465f...ffe4cda60081e362ba75b8e50f6ec0ac88e47d88 You're receiving this email because of your account on salsa.debian.org.
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