Michael R. Crusoe pushed to branch upstream at Debian Med / python-skbio
Commits: 2adc8e92 by Michael R. Crusoe at 2025-09-02T16:42:25+02:00 New upstream version 0.6.3 - - - - - 137 changed files: - .coveragerc - .github/workflows/ci.yml - .github/workflows/release.yml - .github/workflows/website.yml - .pre-commit-config.yaml - CHANGELOG.md - README.rst - ci/aarch64.conda_requirements.txt - ci/conda_requirements.txt - ci/requirements.doc.txt - + doc/editmap.py - + doc/metatag.py - + doc/source/_templates/TreeNode.rst - doc/source/_templates/autosummary/class.rst - + doc/source/_templates/namedtuple.rst - doc/source/alignment.rst - + doc/source/autoinherit.py - doc/source/conf.py - doc/source/diversity.rst - doc/source/embedding.rst - doc/source/index.rst - doc/source/io.rst - doc/source/metadata.rst - doc/source/sequence.rst - doc/source/stats.rst - doc/source/table.rst - doc/source/tree.rst - doc/source/util.rst - doc/source/workflow.rst - pyproject.toml - setup.py - simde-sse2.h - skbio/__init__.py - skbio/alignment/_pairwise.py - skbio/alignment/_tabular_msa.py - skbio/diversity/__init__.py - skbio/diversity/_driver.py - skbio/diversity/_util.py - skbio/diversity/alpha/__init__.py - skbio/diversity/alpha/_base.py - skbio/diversity/alpha/_lladser.py - skbio/diversity/alpha/_pd.py - skbio/diversity/alpha/tests/test_base.py - skbio/diversity/alpha/tests/test_lladser.py - skbio/diversity/beta/_unifrac.py - skbio/diversity/tests/test_driver.py - skbio/diversity/tests/test_util.py - skbio/embedding/__init__.py - skbio/embedding/_embedding.py - skbio/io/__init__.py - skbio/io/_iosources.py - skbio/io/format/blast6.py - skbio/io/format/blast7.py - skbio/io/format/embed.py - skbio/io/format/fasta.py - skbio/io/format/taxdump.py - + skbio/io/format/tests/data/fasta_multi_seq_spaces - + skbio/io/format/tests/data/pdb_hits.txt - + skbio/io/format/tests/data/tiny_embedding_file.npz - skbio/io/format/tests/test_embed.py - skbio/io/format/tests/test_fasta.py - skbio/io/registry.py - skbio/io/tests/test_iosources.py - skbio/io/tests/test_registry.py - skbio/metadata/__init__.py - skbio/metadata/_intersection.pyx - skbio/metadata/_interval.py - skbio/metadata/_metadata.py - skbio/sequence/__init__.py - skbio/sequence/_dna.py - skbio/sequence/_genetic_code.py - skbio/sequence/_grammared_sequence.py - skbio/sequence/_protein.py - skbio/sequence/_rna.py - skbio/sequence/_sequence.py - skbio/sequence/tests/test_sequence.py - skbio/stats/_subsample.py - skbio/stats/composition.py - skbio/stats/distance/_anosim.py - skbio/stats/distance/_base.py - skbio/stats/distance/_mantel.py - skbio/stats/distance/_permanova.py - skbio/stats/distance/_permdisp.py - skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt - skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt - skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt - skbio/stats/distance/tests/test_anosim.py - skbio/stats/distance/tests/test_base.py - skbio/stats/distance/tests/test_mantel.py - skbio/stats/distance/tests/test_permanova.py - skbio/stats/distance/tests/test_permdisp.py - skbio/stats/evolve/_hommola.py - skbio/stats/evolve/tests/test_hommola.py - skbio/stats/ordination/_correspondence_analysis.py - skbio/stats/ordination/_ordination_results.py - skbio/stats/ordination/_principal_coordinate_analysis.py - skbio/stats/ordination/_redundancy_analysis.py - skbio/stats/ordination/tests/test_principal_coordinate_analysis.py - skbio/stats/ordination/tests/test_redundancy_analysis.py - skbio/stats/power.py - skbio/stats/tests/test_composition.py - skbio/stats/tests/test_power.py - skbio/stats/tests/test_subsample.py - skbio/table/_base.py - skbio/tree/__init__.py - + skbio/tree/_c_me.pyx - + skbio/tree/_c_nj.pyx - + skbio/tree/_compare.py - skbio/tree/_majority_rule.py - + skbio/tree/_me.py - skbio/tree/_nj.py - skbio/tree/_tree.py - + skbio/tree/_upgma.py - + skbio/tree/_utils.py - + skbio/tree/tests/test_compare.py - skbio/tree/tests/test_majority_rule.py - + skbio/tree/tests/test_me.py - skbio/tree/tests/test_nj.py - skbio/tree/tests/test_tree.py - + skbio/tree/tests/test_upgma.py - skbio/util/__init__.py - skbio/util/_decorator.py - + skbio/util/_docstring.py - skbio/util/_misc.py - skbio/util/_testing.py - skbio/util/_warning.py - skbio/util/tests/test_decorator.py - + skbio/util/tests/test_docstring.py - skbio/util/tests/test_misc.py - + skbio/util/tests/test_warning.py - web/.exclude - web/conf.py - web/devdoc/release.rst - web/index.rst - web/install.rst - web/learn.rst - web/versions.json The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/commit/2adc8e9288571ae58002eb449821790d677c3fbd -- View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/commit/2adc8e9288571ae58002eb449821790d677c3fbd You're receiving this email because of your account on salsa.debian.org.
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