Author: tille
Date: 2012-07-20 09:42:29 +0000 (Fri, 20 Jul 2012)
New Revision: 11849
Added:
trunk/packages/python-biom-format/
trunk/packages/python-biom-format/trunk/
trunk/packages/python-biom-format/trunk/debian/
trunk/packages/python-biom-format/trunk/debian/changelog
trunk/packages/python-biom-format/trunk/debian/compat
trunk/packages/python-biom-format/trunk/debian/control
trunk/packages/python-biom-format/trunk/debian/copyright
trunk/packages/python-biom-format/trunk/debian/rules
trunk/packages/python-biom-format/trunk/debian/source/
trunk/packages/python-biom-format/trunk/debian/source/format
trunk/packages/python-biom-format/trunk/debian/upstream
trunk/packages/python-biom-format/trunk/debian/watch
Log:
Inject preliminary packaging files for python-biom-format which is needed by
qiime
Added: trunk/packages/python-biom-format/trunk/debian/changelog
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/changelog
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/changelog 2012-07-20
09:42:29 UTC (rev 11849)
@@ -0,0 +1,5 @@
+python-biom-format (1.0.0-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <[email protected]> Fri, 20 Jul 2012 11:21:44 +0200
Added: trunk/packages/python-biom-format/trunk/debian/compat
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/compat
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/compat 2012-07-20
09:42:29 UTC (rev 11849)
@@ -0,0 +1 @@
+9
Added: trunk/packages/python-biom-format/trunk/debian/control
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/control
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/control 2012-07-20
09:42:29 UTC (rev 11849)
@@ -0,0 +1,35 @@
+Source: python-biom-format
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team
<[email protected]>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <[email protected]>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.3
+Homepage: http://biom-format.org/
+Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biom-format/trunk/
+Vcs-Svn:
svn://svn.debian.org/debian-med/trunk/packages/python-biom-format/trunk/
+
+Package: python-biom-format
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Biological Observation Matrix (BIOM) format
+ The BIOM file format (canonically pronounced biome) is designed to be a
+ general-use format for representing biological sample by observation
+ contingency tables. BIOM is a recognized standard for the Earth
+ Microbiome Project and is a Genomics Standards Consortium candidate
+ project.
+ .
+ The BIOM format is designed for general use in broad areas of
+ comparative -omics. For example, in marker-gene surveys, the primary use
+ of this format is to represent OTU tables: the observations in this case
+ are OTUs and the matrix contains counts corresponding to the number of
+ times each OTU is observed in each sample. With respect to metagenome
+ data, this format would be used to represent metagenome tables: the
+ observations in this case might correspond to SEED subsystems, and the
+ matrix would contain counts corresponding to the number of times each
+ subsystem is observed in each metagenome. Similarly, with respect to
+ genome data, this format may be used to represent a set of genomes: the
+ observations in this case again might correspond to SEED subsystems, and
+ the counts would correspond to the number of times each subsystem is
+ observed in each genome.
Added: trunk/packages/python-biom-format/trunk/debian/copyright
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/copyright
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/copyright 2012-07-20
09:42:29 UTC (rev 11849)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: biom-format.org
+Source: http://biom-format.org/ -> links to Github download
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: needs-clarification
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <[email protected]>
+License: LGPL
Added: trunk/packages/python-biom-format/trunk/debian/rules
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/rules
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/rules 2012-07-20
09:42:29 UTC (rev 11849)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+ dh $@ --with python2
Property changes on: trunk/packages/python-biom-format/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/python-biom-format/trunk/debian/source/format
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/source/format
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/source/format
2012-07-20 09:42:29 UTC (rev 11849)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/python-biom-format/trunk/debian/upstream
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/upstream
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/upstream 2012-07-20
09:42:29 UTC (rev 11849)
@@ -0,0 +1,10 @@
+Reference:
+ Author: Daniel McDonald and Jose C. Clemente and Justin Kuczynski and Jai R.
Rideout and Jesse Stombaugh and Doug Wendel and Andreas Wilke and Susan Huse
and John Hufnagle and Folker Meyer and Rob Knight and J. G. Caporaso
+ Title: "The Biological Observation Matrix (BIOM) format or: how I learned to
stop worrying and love the ome-ome"
+ Journal: GigaScience
+ Year: 2012
+ Volume: 1
+ Pages: 7
+ DOI: 10.1186/2047-217X-1-7
+ URL: http://www.gigasciencejournal.com/content/1/1/7
+ eprint: http://www.gigasciencejournal.com/content/pdf/2047-217X-1-7.pdf
Added: trunk/packages/python-biom-format/trunk/debian/watch
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/watch
(rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/watch 2012-07-20
09:42:29 UTC (rev 11849)
@@ -0,0 +1,2 @@
+version=3
+http://biom-format.org/
https://github.com/downloads/biom-format/biom-format/biom-format-([\d.]+)\.tgz
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
