Pierre Gruet pushed to branch upstream at Debian Med / snpeff
Commits: 1b65ffe4 by Pierre Gruet at 2026-02-21T12:20:37+01:00 New upstream version 5.4.b+dfsg - - - - - 65 changed files: - .classpath - + CLAUDE.md - + TO_DO.md - config/snpEff.config - config/snpEff.core.config - + config/v5.4a/covid.txt - + config/v5.4a/md5.txt - + config/v5.4a/sars_covid_genome_ids.txt - + config/v5.4a/snpEff.ENSEMBL_105.config - + config/v5.4a/snpEff.ENSEMBL_110.config - config/snpEff.ENSEMBL_112.config → config/v5.4a/snpEff.ENSEMBL_112.config - + config/v5.4a/snpEff.ENSEMBL_75.config - + config/v5.4a/snpEff.ENSEMBL_99.config - + config/v5.4a/snpEff.ENSEMBL_BFMPP_46.config - + config/v5.4a/snpEff.ENSEMBL_BFMPP_52.config - + config/v5.4a/snpEff.ENSEMBL_BFMPP_57.config - + config/v5.4a/snpEff.FLYBASE_FB2021_06.config - + config/v5.4a/snpEff.FLYBASE_FB2022_02.config - + config/v5.4a/snpEff.NCBI.empty.config - + config/v5.4a/snpEff.UCSC.config - + config/v5.4a/snpEff.bundles.ENSEMBL_BFMPP_57.config - + config/v5.4a/snpEff.config - + config/v5.4a/snpEff.core.config - + config/v5.4a/snpEff.covid19.config - + config/v5.4a/snpEff.custom_requests.config - + config/v5.4a/snpEff.dbs.config - + config/v5.4a/snpEff.test.config - + config/v5.4a/snpEff.version.5.0.config - docs/download/index.html - docs/examples/index.html - docs/index.html - docs/snpeff/additionalann/index.html - docs/snpeff/build_db/index.html - docs/snpeff/commands/index.html - docs/snpeff/introduction/index.html - docs/snpeff/running/index.html - docs/snpsift/dbnsfp/index.html - docs/versions.txt - galaxy/tool-data/snpEff_genomes.loc - galaxy/tool-data/snpEff_genomes.loc.sample - + papers/.DS_Store - + papers/aws-open-data/aws-open-data-agreement-signed.png - + papers/aws-open-data/snpeff.yaml - pom.xml - scripts_build/make.sh - src/bds/config.bds - src/bds/dbNsfp.bds - src/bds/download/download.bds - src/bds/download/downloadHumanDb.bds - src/bds/make.bds - src/docs/download.md - src/docs/examples.md - src/docs/index.md - src/docs/snpeff/additionalann.md - src/docs/snpeff/build_db.md - src/docs/snpeff/commands.md - src/docs/snpeff/introduction.md - src/docs/snpeff/running.md - src/docs/snpsift/dbnsfp.md - src/main/java/org/snpeff/SnpEff.java - src/main/java/org/snpeff/snpEffect/Config.java - src/main/java/org/snpeff/snpEffect/commandLine/SnpEffCmdDownload.java - src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesVcf.java - − test_04_TestCasesEff.csv - − test_04_TestCasesEff.genes.txt The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/commit/1b65ffe42141368ab90c98f61fa444f5efb891dd -- View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/commit/1b65ffe42141368ab90c98f61fa444f5efb891dd You're receiving this email because of your account on salsa.debian.org.
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