Pierre Gruet pushed to branch master at Debian Med / snpeff
Commits: 5d45beba by Pierre Gruet at 2026-02-21T12:20:08+01:00 Rewriting d/watch with version 5 - - - - - 1b65ffe4 by Pierre Gruet at 2026-02-21T12:20:37+01:00 New upstream version 5.4.b+dfsg - - - - - 38f21965 by Pierre Gruet at 2026-02-21T12:24:10+01:00 Update upstream source from tag 'upstream/5.4.b+dfsg' Update to upstream version '5.4.b+dfsg' with Debian dir 3e06af4ddaf5893e2cd0c2ba22f60fffde4538c1 - - - - - 0970d83b by Pierre Gruet at 2026-02-21T12:25:58+01:00 Refreshing patches - - - - - 3bd371ec by Pierre Gruet at 2026-02-21T12:26:15+01:00 Removing Priority: optional, which is default - - - - - d1060e08 by Pierre Gruet at 2026-02-21T12:26:20+01:00 Removing R-R-R: no, which is now default - - - - - 520c69ff by Pierre Gruet at 2026-02-21T12:26:30+01:00 Raising Standards version to 4.7.3 - - - - - d45b2f22 by Pierre Gruet at 2026-02-21T15:35:59+01:00 Updating changelog - - - - - a7ac1bd6 by Pierre Gruet at 2026-02-21T15:37:03+01:00 Upload to unstable - - - - - 70 changed files: - .classpath - + CLAUDE.md - + TO_DO.md - config/snpEff.config - config/snpEff.core.config - + config/v5.4a/covid.txt - + config/v5.4a/md5.txt - + config/v5.4a/sars_covid_genome_ids.txt - + config/v5.4a/snpEff.ENSEMBL_105.config - + config/v5.4a/snpEff.ENSEMBL_110.config - config/snpEff.ENSEMBL_112.config → config/v5.4a/snpEff.ENSEMBL_112.config - + config/v5.4a/snpEff.ENSEMBL_75.config - + config/v5.4a/snpEff.ENSEMBL_99.config - + config/v5.4a/snpEff.ENSEMBL_BFMPP_46.config - + config/v5.4a/snpEff.ENSEMBL_BFMPP_52.config - + config/v5.4a/snpEff.ENSEMBL_BFMPP_57.config - + config/v5.4a/snpEff.FLYBASE_FB2021_06.config - + config/v5.4a/snpEff.FLYBASE_FB2022_02.config - + config/v5.4a/snpEff.NCBI.empty.config - + config/v5.4a/snpEff.UCSC.config - + config/v5.4a/snpEff.bundles.ENSEMBL_BFMPP_57.config - + config/v5.4a/snpEff.config - + config/v5.4a/snpEff.core.config - + config/v5.4a/snpEff.covid19.config - + config/v5.4a/snpEff.custom_requests.config - + config/v5.4a/snpEff.dbs.config - + config/v5.4a/snpEff.test.config - + config/v5.4a/snpEff.version.5.0.config - debian/changelog - debian/control - debian/patches/alter_pom_for_debian_packaging.patch - debian/patches/update_launching_script_and_config_file_for_Debian.patch - debian/watch - docs/download/index.html - docs/examples/index.html - docs/index.html - docs/snpeff/additionalann/index.html - docs/snpeff/build_db/index.html - docs/snpeff/commands/index.html - docs/snpeff/introduction/index.html - docs/snpeff/running/index.html - docs/snpsift/dbnsfp/index.html - docs/versions.txt - galaxy/tool-data/snpEff_genomes.loc - galaxy/tool-data/snpEff_genomes.loc.sample - + papers/.DS_Store - + papers/aws-open-data/aws-open-data-agreement-signed.png - + papers/aws-open-data/snpeff.yaml - pom.xml - scripts_build/make.sh - src/bds/config.bds - src/bds/dbNsfp.bds - src/bds/download/download.bds - src/bds/download/downloadHumanDb.bds - src/bds/make.bds - src/docs/download.md - src/docs/examples.md - src/docs/index.md - src/docs/snpeff/additionalann.md - src/docs/snpeff/build_db.md - src/docs/snpeff/commands.md - src/docs/snpeff/introduction.md - src/docs/snpeff/running.md - src/docs/snpsift/dbnsfp.md - src/main/java/org/snpeff/SnpEff.java - src/main/java/org/snpeff/snpEffect/Config.java - src/main/java/org/snpeff/snpEffect/commandLine/SnpEffCmdDownload.java - src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesVcf.java - − test_04_TestCasesEff.csv - − test_04_TestCasesEff.genes.txt The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/2639b0e69c312ab3d0522490c4488cd47f2a65d5...a7ac1bd6cb2c572fc4ed003d9566ec41072583a3 -- View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/2639b0e69c312ab3d0522490c4488cd47f2a65d5...a7ac1bd6cb2c572fc4ed003d9566ec41072583a3 You're receiving this email because of your account on salsa.debian.org.
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