Author: tille Date: 2012-11-07 11:19:22 +0000 (Wed, 07 Nov 2012) New Revision: 12496
Added: trunk/packages/phyloviz/ trunk/packages/phyloviz/core/ trunk/packages/phyloviz/core/trunk/ trunk/packages/phyloviz/core/trunk/debian/ trunk/packages/phyloviz/core/trunk/debian/changelog trunk/packages/phyloviz/core/trunk/debian/compat trunk/packages/phyloviz/core/trunk/debian/control trunk/packages/phyloviz/core/trunk/debian/rules trunk/packages/phyloviz/core/trunk/debian/source/ trunk/packages/phyloviz/core/trunk/debian/source/format trunk/packages/phyloviz/core/trunk/debian/watch Log: Inject relevant machine-readable metadata for phyloviz-core, other plugins will follow once the packaging stuff is finished Added: trunk/packages/phyloviz/core/trunk/debian/changelog =================================================================== --- trunk/packages/phyloviz/core/trunk/debian/changelog (rev 0) +++ trunk/packages/phyloviz/core/trunk/debian/changelog 2012-11-07 11:19:22 UTC (rev 12496) @@ -0,0 +1,5 @@ +phyloviz-core (0.0.20111121-1) unstable; urgency=low + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Wed, 07 Nov 2012 12:07:35 +0100 Added: trunk/packages/phyloviz/core/trunk/debian/compat =================================================================== --- trunk/packages/phyloviz/core/trunk/debian/compat (rev 0) +++ trunk/packages/phyloviz/core/trunk/debian/compat 2012-11-07 11:19:22 UTC (rev 12496) @@ -0,0 +1 @@ +9 Added: trunk/packages/phyloviz/core/trunk/debian/control =================================================================== --- trunk/packages/phyloviz/core/trunk/debian/control (rev 0) +++ trunk/packages/phyloviz/core/trunk/debian/control 2012-11-07 11:19:22 UTC (rev 12496) @@ -0,0 +1,33 @@ +Source: phyloviz-core +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9), javahelper (>=0.25), default-jdk, ant +Standards-Version: 3.9.3 +Homepage: http://www.phyloviz.net +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/phyloviz/core/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/phyloviz/core/trunk/ + +Package: phyloviz-core +Architecture: all +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: phylogenetic inference and data visualization for sequence based typing methods + Phyloviz allows the analysis of sequence-based typing methods that + generate allelic profiles and their associated epidemiological data. + . + For representing the possible evolutionary relationships between + strains identified by allelic profiles it uses the goeBURST algorithm, a + refinement of eBURST algorithm proposed by Feil et al., and its + expansion to generate a complete minimum spanning tree (MST). + . + Phyloviz is being developed in a modular way to allow its expansion + with novel data analysis algorithms and new visualization modules. + . + Capabilities + * Modularity allows the creation of plugins to analyse different types of data + * Allows the visualization of data overlaid onto goeBURST and MST results + * Confidence assessment of each link in the graph + * Query the data and see the query results directly onto the graphs + * Search your data set using regular expressions to select what to display + * Export the results as images in various formats: eps, png, gif, pdf, etc Added: trunk/packages/phyloviz/core/trunk/debian/rules =================================================================== --- trunk/packages/phyloviz/core/trunk/debian/rules (rev 0) +++ trunk/packages/phyloviz/core/trunk/debian/rules 2012-11-07 11:19:22 UTC (rev 12496) @@ -0,0 +1,9 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ --with javahelper + +#get-orig-source: +# . debian/get-orig-source Property changes on: trunk/packages/phyloviz/core/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/phyloviz/core/trunk/debian/source/format =================================================================== --- trunk/packages/phyloviz/core/trunk/debian/source/format (rev 0) +++ trunk/packages/phyloviz/core/trunk/debian/source/format 2012-11-07 11:19:22 UTC (rev 12496) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/phyloviz/core/trunk/debian/watch =================================================================== --- trunk/packages/phyloviz/core/trunk/debian/watch (rev 0) +++ trunk/packages/phyloviz/core/trunk/debian/watch 2012-11-07 11:19:22 UTC (rev 12496) @@ -0,0 +1,2 @@ +# version=3 +# currently upstream has no proper versioning _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
