Author: tille Date: 2012-11-07 15:06:06 +0000 (Wed, 07 Nov 2012) New Revision: 12509
Added: trunk/packages/oases/ trunk/packages/oases/trunk/ trunk/packages/oases/trunk/debian/ trunk/packages/oases/trunk/debian/changelog trunk/packages/oases/trunk/debian/compat trunk/packages/oases/trunk/debian/control trunk/packages/oases/trunk/debian/copyright trunk/packages/oases/trunk/debian/rules trunk/packages/oases/trunk/debian/source/ trunk/packages/oases/trunk/debian/source/format trunk/packages/oases/trunk/debian/upstream trunk/packages/oases/trunk/debian/watch Log: Inject machine readable files for oases packaging Added: trunk/packages/oases/trunk/debian/changelog =================================================================== --- trunk/packages/oases/trunk/debian/changelog (rev 0) +++ trunk/packages/oases/trunk/debian/changelog 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1,5 @@ +oases (0.2.08-1) unstable; urgency=low + + * Initial release (Closes: #<bug>) + + -- DMPT <[email protected]> Thu, 24 May 2012 14:30:13 +0200 Added: trunk/packages/oases/trunk/debian/compat =================================================================== --- trunk/packages/oases/trunk/debian/compat (rev 0) +++ trunk/packages/oases/trunk/debian/compat 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1 @@ +9 Added: trunk/packages/oases/trunk/debian/control =================================================================== --- trunk/packages/oases/trunk/debian/control (rev 0) +++ trunk/packages/oases/trunk/debian/control 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1,21 @@ +Source: oases +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.4 +Homepage: https://www.ebi.ac.uk/~zerbino/oases/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/oases/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/oases/trunk/ + +Package: oases +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: de novo transcriptome assembler for very short reads + Oases is a de novo transcriptome assembler designed to produce + transcripts from short read sequencing technologies, such as Illumina, + SOLiD, or 454 in the absence of any genomic assembly. Oases uploads a + preliminary assembly produced by Velvet, and clusters the contigs into + small groups, called loci. It then exploits the paired-end read and long + read information, when available, to construct transcript isoforms. Added: trunk/packages/oases/trunk/debian/copyright =================================================================== --- trunk/packages/oases/trunk/debian/copyright (rev 0) +++ trunk/packages/oases/trunk/debian/copyright 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1,26 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: oases +Source: https://www.ebi.ac.uk/~zerbino/oases/ + +Files: * +Copyright: © 2010-2011, Daniel Zerbino <[email protected]> + Marcel Schulz <[email protected]> +License: GPL-3 + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: GPL-3 + +License: GPL-3 + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + On Debian systems you can find a copy of the GNU General Public License + version 3 at /usr/share/common-licenses/GPL-3 Added: trunk/packages/oases/trunk/debian/rules =================================================================== --- trunk/packages/oases/trunk/debian/rules (rev 0) +++ trunk/packages/oases/trunk/debian/rules 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1,6 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ Property changes on: trunk/packages/oases/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/oases/trunk/debian/source/format =================================================================== --- trunk/packages/oases/trunk/debian/source/format (rev 0) +++ trunk/packages/oases/trunk/debian/source/format 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/oases/trunk/debian/upstream =================================================================== --- trunk/packages/oases/trunk/debian/upstream (rev 0) +++ trunk/packages/oases/trunk/debian/upstream 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1,12 @@ +Reference: + Author: Marcel H. Schulz and Daniel R. Zerbino and Martin Vingron1 and Ewan Birney + Title: "Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels" + Journal: Bioinformatics + Year: 2012 + Volume: 28 + Number: 8 + Pages: 1086-1092 + DOI: 10.1093/bioinformatics/bts094 + PMID: 22368243 + URL: http://bioinformatics.oxfordjournals.org/content/28/8/1086 + eprint: http://bioinformatics.oxfordjournals.org/content/28/8/1086.full.pdf+html Added: trunk/packages/oases/trunk/debian/watch =================================================================== --- trunk/packages/oases/trunk/debian/watch (rev 0) +++ trunk/packages/oases/trunk/debian/watch 2012-11-07 15:06:06 UTC (rev 12509) @@ -0,0 +1,2 @@ +version=3 +http://www.ebi.ac.uk/~zerbino/oases/ oases_([\d.]+)\.tgz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
