Author: tille Date: 2012-11-07 15:51:51 +0000 (Wed, 07 Nov 2012) New Revision: 12512
Added: trunk/packages/seqtk/ trunk/packages/seqtk/trunk/ trunk/packages/seqtk/trunk/debian/ trunk/packages/seqtk/trunk/debian/changelog trunk/packages/seqtk/trunk/debian/compat trunk/packages/seqtk/trunk/debian/control trunk/packages/seqtk/trunk/debian/copyright trunk/packages/seqtk/trunk/debian/get-orig-source trunk/packages/seqtk/trunk/debian/rules trunk/packages/seqtk/trunk/debian/source/ trunk/packages/seqtk/trunk/debian/source/format trunk/packages/seqtk/trunk/debian/watch Log: Inject machine readable files for seqtk packaging to enable showing up at tasks page easily; TODO: Sort out how to reasonable obtain source from Github reasonably Added: trunk/packages/seqtk/trunk/debian/changelog =================================================================== --- trunk/packages/seqtk/trunk/debian/changelog (rev 0) +++ trunk/packages/seqtk/trunk/debian/changelog 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1,5 @@ +seqtk (0.0.20121016-1) unstable; urgency=low + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Wed, 07 Nov 2012 16:07:35 +0100 Added: trunk/packages/seqtk/trunk/debian/compat =================================================================== --- trunk/packages/seqtk/trunk/debian/compat (rev 0) +++ trunk/packages/seqtk/trunk/debian/compat 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1 @@ +9 Added: trunk/packages/seqtk/trunk/debian/control =================================================================== --- trunk/packages/seqtk/trunk/debian/control (rev 0) +++ trunk/packages/seqtk/trunk/debian/control 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1,24 @@ +Source: seqtk +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.4 +Homepage: http://kevin-gattaca.blogspot.de/2012/05/program-seqtk-for-sampling-trimming.html +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/seqtk/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/seqtk/trunk/ + +Package: seqtk +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: sampling, trimming, fastq2fasta, subsequence, reverse complement + Currently, seqtk supports quality based trimming with the phred + algorithm, converting fastq to fasta, reverse complementing sequences, + extracting or masking subsequences in regions given in a BED/name list + file, and more. It contains a subsampling module to sample exactly n + sequences or a fraction of sequences. + . + Seqtk supports both fasta and fastq input files, which can be + optionally gzip compressed. + Added: trunk/packages/seqtk/trunk/debian/copyright =================================================================== --- trunk/packages/seqtk/trunk/debian/copyright (rev 0) +++ trunk/packages/seqtk/trunk/debian/copyright 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1,32 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: seqtk +Source: https://github.com/lh3/seqtk + +Files: * +Copyright: © 2008-2012 Heng Li <[email protected]> +License: MIT + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: MIT + +License: MIT + Permission is hereby granted, free of charge, to any person obtaining + a copy of this software and associated documentation files (the + "Software"), to deal in the Software without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, sublicense, and/or sell copies of the Software, and to + permit persons to whom the Software is furnished to do so, subject to + the following conditions: + . + The above copyright notice and this permission notice shall be + included in all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS + BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN + ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN + CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE + SOFTWARE. Added: trunk/packages/seqtk/trunk/debian/get-orig-source =================================================================== --- trunk/packages/seqtk/trunk/debian/get-orig-source (rev 0) +++ trunk/packages/seqtk/trunk/debian/get-orig-source 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1,3 @@ +#!/bin/sh +echo "Need to ask upstream for real release. Meanwhile you can do:" +echo " git clone https://github.com/lh3/seqtk.git"; Property changes on: trunk/packages/seqtk/trunk/debian/get-orig-source ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/seqtk/trunk/debian/rules =================================================================== --- trunk/packages/seqtk/trunk/debian/rules (rev 0) +++ trunk/packages/seqtk/trunk/debian/rules 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1,9 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +%: + dh $@ + +#get-orig-source: +# . debian/get-orig-source Property changes on: trunk/packages/seqtk/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/seqtk/trunk/debian/source/format =================================================================== --- trunk/packages/seqtk/trunk/debian/source/format (rev 0) +++ trunk/packages/seqtk/trunk/debian/source/format 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/seqtk/trunk/debian/watch =================================================================== --- trunk/packages/seqtk/trunk/debian/watch (rev 0) +++ trunk/packages/seqtk/trunk/debian/watch 2012-11-07 15:51:51 UTC (rev 12512) @@ -0,0 +1,3 @@ +# version=3 +# Only at +# https://github.com/lh3/seqtk.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
