Author: tille
Date: 2012-11-08 10:28:02 +0000 (Thu, 08 Nov 2012)
New Revision: 12515
Modified:
trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch
Log:
Fix wrapper script to properly call jar file (thanks to Olivier Sallou)
Modified: trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch
===================================================================
--- trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch
2012-11-07 21:08:20 UTC (rev 12514)
+++ trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch
2012-11-08 10:28:02 UTC (rev 12515)
@@ -20,3 +20,23 @@
my @java_args;
my @files;
+@@ -177,10 +177,10 @@ if (@files or $version or $help) {
+
+
+ if ($java_bin ne 'java') {
+- system $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication",
@files;
++ system $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar",
@files;
+ }
+ else {
+- exec $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication",
@files;
++ exec $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files;
+ }
+
+ __DATA__
+@@ -273,4 +273,4 @@ BUGS
+ Any bugs in fastqc should be reported either to
[email protected]
+ or in www.bioinformatics.babraham.ac.uk/bugzilla/
+
+-
+\ No newline at end of file
++
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