Author: tille Date: 2012-12-19 17:05:51 +0000 (Wed, 19 Dec 2012) New Revision: 12704
Modified: trunk/packages/macs/trunk/debian/control trunk/packages/macs/trunk/debian/rules Log: Enable building manpages even in pbuilder Modified: trunk/packages/macs/trunk/debian/control =================================================================== --- trunk/packages/macs/trunk/debian/control 2012-12-19 15:30:40 UTC (rev 12703) +++ trunk/packages/macs/trunk/debian/control 2012-12-19 17:05:51 UTC (rev 12704) @@ -6,7 +6,8 @@ Uploaders: Tim Booth <[email protected]>, H. Soon Gweon <[email protected]>, Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 9), cython (>= 0.15), python-dev (>= 2.7), help2man +Build-Depends: debhelper (>= 9), cython (>= 0.15), python-dev (>= 2.7), help2man, + python-numpy Standards-Version: 3.9.4 X-Python-Version: >=2.7 Homepage: https://github.com/taoliu/MACS/ @@ -15,7 +16,7 @@ Package: macs Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends} +Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy Description: Model-based Analysis of ChIP-Seq on short reads sequencers MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, Modified: trunk/packages/macs/trunk/debian/rules =================================================================== --- trunk/packages/macs/trunk/debian/rules 2012-12-19 15:30:40 UTC (rev 12703) +++ trunk/packages/macs/trunk/debian/rules 2012-12-19 17:05:51 UTC (rev 12704) @@ -20,28 +20,30 @@ dh_auto_install # try to create man pages whereever possible - mkdir -p $(mandir) + mkdir -p $(mandir) + export PYTHONPATH=$(CURDIR)/build/`ls build | grep ^lib\. | head -n 1` ; \ + export PATH=$(CURDIR)/build/`ls build | grep ^scripts- | head -n 1`:$${PATH} ; \ help2man --no-info --name='Fine-tuning script to call broad peaks from a single bedGraph track for scores' \ - --version-string="$(version)" \ - "python $(CURDIR)/bin/bdgbroadcall" > $(mandir)/bdgbroadcall.1 + --version-string="$(version)" \ + bdgbroadcall > $(mandir)/bdgbroadcall.1 ; \ help2man --no-info --name='Calculate scores using certain method by comparing a bedGraph file from treatment and a file from control representing local bias' \ - --version-string="$(version)" \ - "python $(CURDIR)/bin/bdgcmp" > $(mandir)/bdgcmp.1 + --version-string="$(version)" \ + bdgcmp > $(mandir)/bdgcmp.1 ; \ help2man --no-info --name='Naive call differential peaks from 4 bedGraph tracks for scores' \ --version-string="$(version)" \ - "python $(CURDIR)/bin/bdgdiff" > $(mandir)/bdgdiff.1 + bdgdiff > $(mandir)/bdgdiff.1 ; \ help2man --no-info --name='Naive call peaks from a single bedGraph track for scores' \ --version-string="$(version)" \ - "python $(CURDIR)/bin/bdgpeakcall" > $(mandir)/bdgpeakcall.1 + bdgpeakcall > $(mandir)/bdgpeakcall.1 ; \ help2man --no-info --name='Filter duplicate reads depending on sequencing depth' \ --version-string="$(version)" \ - "python $(CURDIR)/bin/filterdup" > $(mandir)/filterdup.1 + filterdup > $(mandir)/filterdup.1 ; \ help2man --no-info --name='Model-based Analysis for ChIP-Sequencing' \ --version-string="$(version)" \ - "python $(CURDIR)/bin/macs2" > $(mandir)/macs2.1 + macs2 > $(mandir)/macs2.1 ; \ help2man --no-info --name='Differential Analysis for ChIP-Sequencing' \ --version-string="$(version)" \ - "python $(CURDIR)/bin/macs2diff" > $(mandir)/macs2diff.1 + macs2diff > $(mandir)/macs2diff.1 ; \ help2man --no-info --name='Random sample certain number/percentage of tags' \ --version-string="$(version)" \ - "python $(CURDIR)/bin/randsample" > $(mandir)/randsample.1 + randsample > $(mandir)/randsample.1 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
