Author: osallou Date: 2013-01-03 10:11:25 +0000 (Thu, 03 Jan 2013) New Revision: 12731
Added: trunk/packages/biojava3/trunk/debian/patches/skip_network_related_tests Modified: trunk/packages/biojava3/trunk/debian/changelog trunk/packages/biojava3/trunk/debian/patches/series Log: skip network tests Modified: trunk/packages/biojava3/trunk/debian/changelog =================================================================== --- trunk/packages/biojava3/trunk/debian/changelog 2013-01-01 21:26:01 UTC (rev 12730) +++ trunk/packages/biojava3/trunk/debian/changelog 2013-01-03 10:11:25 UTC (rev 12731) @@ -1,3 +1,9 @@ +biojava3-live (3.0.5-2) unstable; urgency=low + + * Remove tests needing network access (Closes: #696947) + + -- Olivier Sallou <[email protected]> Thu, 03 Jan 2013 11:08:51 +0100 + biojava3-live (3.0.5-1) unstable; urgency=low * New upstream release Modified: trunk/packages/biojava3/trunk/debian/patches/series =================================================================== --- trunk/packages/biojava3/trunk/debian/patches/series 2013-01-01 21:26:01 UTC (rev 12730) +++ trunk/packages/biojava3/trunk/debian/patches/series 2013-01-03 10:11:25 UTC (rev 12731) @@ -1,3 +1,4 @@ use_simple_json fix_code_to_support_latest_jmol fix_ascii_characters_mapping +skip_network_related_tests Added: trunk/packages/biojava3/trunk/debian/patches/skip_network_related_tests =================================================================== --- trunk/packages/biojava3/trunk/debian/patches/skip_network_related_tests (rev 0) +++ trunk/packages/biojava3/trunk/debian/patches/skip_network_related_tests 2013-01-03 10:11:25 UTC (rev 12731) @@ -0,0 +1,31 @@ +Author: Olivier Sallou <osallou@debian/org> +Last-Updated: 2013-01-03 +Subject: Some tests use network access +Description: Remove tests requiring external + network access +Forwarded: yes +Bug: https://redmine.open-bio.org/issues/3402 +--- a/biojava3-protein-disorder/src/test/java/org/biojava3/ronn/NonstandardProteinCompoundTest.java ++++ b/biojava3-protein-disorder/src/test/java/org/biojava3/ronn/NonstandardProteinCompoundTest.java +@@ -40,20 +40,7 @@ + + public void testUniprot(String uniprotID) throws Exception{ + +- ProteinSequence seq = getUniprot(uniprotID); +- +- AminoAcidCompoundSet compoundSet = AminoAcidCompoundSet.getAminoAcidCompoundSet(); +- +-/* for (AminoAcidCompound compound : seq) { +- System.out.println(compound.getShortName() + " " + compound.getLongName() + " " + compound.getDescription() + " | " + compoundSet.getEquivalentCompounds(compound) + " " + compound.getMolecularWeight() + " " + compound.getBase()); +- } +- */ +- compoundSet.verifySequence(seq); +- +- +- +- float[] values = Jronn.getDisorderScores(seq); +- ++ // Skip network related tests + + } + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
