Author: osallou Date: 2013-01-03 10:23:31 +0000 (Thu, 03 Jan 2013) New Revision: 12732
Added: trunk/packages/biojava3/tags/3.0.5-2/ trunk/packages/biojava3/tags/3.0.5-2/debian/changelog trunk/packages/biojava3/tags/3.0.5-2/debian/patches/series trunk/packages/biojava3/tags/3.0.5-2/debian/patches/skip_network_related_tests Removed: trunk/packages/biojava3/tags/3.0.5-2/debian/changelog trunk/packages/biojava3/tags/3.0.5-2/debian/patches/series Log: [svn-buildpackage] Tagging biojava3-live 3.0.5-2 Deleted: trunk/packages/biojava3/tags/3.0.5-2/debian/changelog =================================================================== --- trunk/packages/biojava3/trunk/debian/changelog 2013-01-01 21:26:01 UTC (rev 12730) +++ trunk/packages/biojava3/tags/3.0.5-2/debian/changelog 2013-01-03 10:23:31 UTC (rev 12732) @@ -1,22 +0,0 @@ -biojava3-live (3.0.5-1) unstable; urgency=low - - * New upstream release - * Use forester 1.005 - - -- Olivier Sallou <[email protected]> Sun, 02 Dec 2012 22:35:09 +0100 - -biojava3-live (3.0.4-2) unstable; urgency=low - - [ Olivier Sallou ] - Patch from James Page <[email protected]> (Closes: #683513). - * Transition to use default java implementation: - - d/control: Use default-jdk (>= 1:1.6) instead of openjdk-6-jdk - for package build. - - -- Olivier Sallou <[email protected]> Wed, 01 Aug 2012 15:45:32 +0200 - -biojava3-live (3.0.4-1) unstable; urgency=low - - * Initial release (Closes: #674265) - - -- Olivier Sallou <[email protected]> Wed, 23 May 2012 18:13:46 +0200 Copied: trunk/packages/biojava3/tags/3.0.5-2/debian/changelog (from rev 12731, trunk/packages/biojava3/trunk/debian/changelog) =================================================================== --- trunk/packages/biojava3/tags/3.0.5-2/debian/changelog (rev 0) +++ trunk/packages/biojava3/tags/3.0.5-2/debian/changelog 2013-01-03 10:23:31 UTC (rev 12732) @@ -0,0 +1,28 @@ +biojava3-live (3.0.5-2) unstable; urgency=low + + * Remove tests needing network access (Closes: #696947) + + -- Olivier Sallou <[email protected]> Thu, 03 Jan 2013 11:08:51 +0100 + +biojava3-live (3.0.5-1) unstable; urgency=low + + * New upstream release + * Use forester 1.005 + + -- Olivier Sallou <[email protected]> Sun, 02 Dec 2012 22:35:09 +0100 + +biojava3-live (3.0.4-2) unstable; urgency=low + + [ Olivier Sallou ] + Patch from James Page <[email protected]> (Closes: #683513). + * Transition to use default java implementation: + - d/control: Use default-jdk (>= 1:1.6) instead of openjdk-6-jdk + for package build. + + -- Olivier Sallou <[email protected]> Wed, 01 Aug 2012 15:45:32 +0200 + +biojava3-live (3.0.4-1) unstable; urgency=low + + * Initial release (Closes: #674265) + + -- Olivier Sallou <[email protected]> Wed, 23 May 2012 18:13:46 +0200 Deleted: trunk/packages/biojava3/tags/3.0.5-2/debian/patches/series =================================================================== --- trunk/packages/biojava3/trunk/debian/patches/series 2013-01-01 21:26:01 UTC (rev 12730) +++ trunk/packages/biojava3/tags/3.0.5-2/debian/patches/series 2013-01-03 10:23:31 UTC (rev 12732) @@ -1,3 +0,0 @@ -use_simple_json -fix_code_to_support_latest_jmol -fix_ascii_characters_mapping Copied: trunk/packages/biojava3/tags/3.0.5-2/debian/patches/series (from rev 12731, trunk/packages/biojava3/trunk/debian/patches/series) =================================================================== --- trunk/packages/biojava3/tags/3.0.5-2/debian/patches/series (rev 0) +++ trunk/packages/biojava3/tags/3.0.5-2/debian/patches/series 2013-01-03 10:23:31 UTC (rev 12732) @@ -0,0 +1,4 @@ +use_simple_json +fix_code_to_support_latest_jmol +fix_ascii_characters_mapping +skip_network_related_tests Copied: trunk/packages/biojava3/tags/3.0.5-2/debian/patches/skip_network_related_tests (from rev 12731, trunk/packages/biojava3/trunk/debian/patches/skip_network_related_tests) =================================================================== --- trunk/packages/biojava3/tags/3.0.5-2/debian/patches/skip_network_related_tests (rev 0) +++ trunk/packages/biojava3/tags/3.0.5-2/debian/patches/skip_network_related_tests 2013-01-03 10:23:31 UTC (rev 12732) @@ -0,0 +1,31 @@ +Author: Olivier Sallou <osallou@debian/org> +Last-Updated: 2013-01-03 +Subject: Some tests use network access +Description: Remove tests requiring external + network access +Forwarded: yes +Bug: https://redmine.open-bio.org/issues/3402 +--- a/biojava3-protein-disorder/src/test/java/org/biojava3/ronn/NonstandardProteinCompoundTest.java ++++ b/biojava3-protein-disorder/src/test/java/org/biojava3/ronn/NonstandardProteinCompoundTest.java +@@ -40,20 +40,7 @@ + + public void testUniprot(String uniprotID) throws Exception{ + +- ProteinSequence seq = getUniprot(uniprotID); +- +- AminoAcidCompoundSet compoundSet = AminoAcidCompoundSet.getAminoAcidCompoundSet(); +- +-/* for (AminoAcidCompound compound : seq) { +- System.out.println(compound.getShortName() + " " + compound.getLongName() + " " + compound.getDescription() + " | " + compoundSet.getEquivalentCompounds(compound) + " " + compound.getMolecularWeight() + " " + compound.getBase()); +- } +- */ +- compoundSet.verifySequence(seq); +- +- +- +- float[] values = Jronn.getDisorderScores(seq); +- ++ // Skip network related tests + + } + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
