Author: tille Date: 2013-01-16 10:59:10 +0000 (Wed, 16 Jan 2013) New Revision: 12796
Removed: trunk/packages/meme/trunk/debian/rules Log: Delete rules file to recreate it later with proper permission Deleted: trunk/packages/meme/trunk/debian/rules =================================================================== --- trunk/packages/meme/trunk/debian/rules 2013-01-16 09:05:48 UTC (rev 12795) +++ trunk/packages/meme/trunk/debian/rules 2013-01-16 10:59:10 UTC (rev 12796) @@ -1,59 +0,0 @@ -#!/usr/bin/make -f -# debian/rules file for meme -# Andreas Tille <[email protected]> -# Thorsten Alteholz <[email protected]> -# GPL - -DBPATH=/var/lib/meme -LOGPATH=/var/log/meme -MODULES=alphtype ama ama-qvalues ame beadstring beeml2meme cat_max centrimo ceqlogo changetoweb chen2meme clustalw-io clustalw2fasta clustalw2phylip compare_dates compute-prior-dist compute-uniform-priors download draw-mhmm dreme dust fasta-center fasta-dinucleotide-shuffle fasta-dinucleotide-shuffle.py fasta-fetch fasta-get-markov fasta-hamming-enrich fasta-hamming-enrich.py fasta-io fasta-make-index fasta-shuffle-letters fasta-subsample fasta-unique-names fimo fitevd gendb get_db_csv getsize gomo gomo_highlight hart2meme-bkg hartemink2psp hypergeometric.py iupac2meme jaspar2meme llr log-hmm mast mast2txt mcast meme meme-chip meme-get-motif meme-xml-html meme.bin meme2images meme2meme meme_p metameme mhmm mhmm-io mhmm2html mhmme mhmms mhmmscan motiph nmica2meme oldmeme2meme plotgen pmp_bf prior_utils.pl priority2meme psp-gen purge qvalue ramen ranksum_test read_fasta_file.pl reconcile-tree-alignment reduce-alignment remove-alignment-gaps rna2meme scpd2meme sd sequence.py shadow spamo taipale2meme tamo2meme tomtom transfac2meme tree uniprobe2meme update_db update_meme_tests xsltproc_lite - -%: - dh $@ --with autoreconf,python2 - -override_dh_auto_configure: - ./configure --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --sysconfdir=/etc/meme \ - --with-logs=$(LOGPATH) --with-db=$(DBPATH) - -override_dh_auto_install: - # make MEME_DB=`pwd`/debian/meme/$(DBPATH) install - dh_auto_install -- MEME_DB=$(DBPATH) - -override_dh_install: - #Sort out some funny locations used by upstream - mv debian/tmp/usr/doc/examples debian/tmp || true - mkdir -p debian/tmp/usr/share/doc/meme ; mv debian/tmp/usr/doc/* debian/tmp/usr/share/doc/meme - mv debian/tmp/etc/meme/meme.doc debian/tmp/usr/share/doc/meme - find ./* -print|grep STRGGTCAN.meme|xargs chmod 644 - find ./* -print - mkdir -p debian/tmp/usr/share/perl5/Meme - cp website/scripts/*.pm debian/tmp/usr/share/perl5/Meme - cp scripts/*.pm debian/tmp/usr/share/perl5/Meme - mkdir -p debian/tmp-manpages - $(foreach var,$(MODULES), /usr/bin/pod2man debian/tmp/usr/bin/$(var) > debian/tmp-manpages/$(var).1;) - dh_install -v --sourcedir=debian/tmp - find ./* -print - -override_dh_auto_clean: - dh_auto_clean - rm -rf tests/*/*.sed - rm -rf tests/results - cd etc; rm -f fasta_db.csv fasta_db.index gomo_db.csv logo.js.xsl meme.css.xsl motif_db.csv motif_db.index tomtom_config.xml - rm -f scripts/*.pyc - rm -f aclocal.m4 - find -type f -name Makefile -exec rm '{}' ';' - -#XXX Disable testing temporarily to save time -override_dh_auto_test: - true - -override_dh_compress: - dh_compress -v -X.doc - -get-orig-source: - mkdir -p ../tarballs - uscan --verbose --force-download --destdir=../tarballs - cd ../tarballs; \ - wget -r --no-directories --no-parent -l2 ftp://ftp.ebi.edu.au/pub/software/MEME/r4.9.0/patches \ - rm -f .r.html - echo "Make sure you use the downloaded patches `ls ../tarballs/patch_*` as quilt patch and use the proper patch level in package version in debian/copyright." _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
