Author: tille
Date: 2013-02-12 15:40:45 +0000 (Tue, 12 Feb 2013)
New Revision: 12991
Added:
trunk/packages/meme/trunk/debian/patches/what-is-entries-for-pod2man.patch
Modified:
trunk/packages/meme/trunk/debian/patches/series
trunk/packages/meme/trunk/debian/rules
Log:
Further work to increase manpages
Modified: trunk/packages/meme/trunk/debian/patches/series
===================================================================
--- trunk/packages/meme/trunk/debian/patches/series 2013-02-12 15:24:33 UTC
(rev 12990)
+++ trunk/packages/meme/trunk/debian/patches/series 2013-02-12 15:40:45 UTC
(rev 12991)
@@ -3,3 +3,4 @@
fix_installer_paths
#broken and most probably unneeded, see Remark inside the file# fix_plib_path
perl-include.patch
+what-is-entries-for-pod2man.patch
Added:
trunk/packages/meme/trunk/debian/patches/what-is-entries-for-pod2man.patch
===================================================================
--- trunk/packages/meme/trunk/debian/patches/what-is-entries-for-pod2man.patch
(rev 0)
+++ trunk/packages/meme/trunk/debian/patches/what-is-entries-for-pod2man.patch
2013-02-12 15:40:45 UTC (rev 12991)
@@ -0,0 +1,29 @@
+Author: Andreas Tille <[email protected]>
+Description: Fix .pl files to enable proper manpages via pod2man
+
+--- a/scripts/beeml2meme.pl.in
++++ b/scripts/beeml2meme.pl.in
+@@ -17,6 +17,10 @@ use Fcntl qw(O_RDONLY);
+ use Getopt::Long;
+ use Pod::Usage;
+
++=head1 NAME
++
++beeml2meme - Convert a file containing list of TFBS motif matrices from BEEML
++
+ =head1 SYNOPSIS
+
+ beeml2meme [options] <matrix file>
+--- a/scripts/nmica2meme.pl.in
++++ b/scripts/nmica2meme.pl.in
+@@ -19,6 +19,10 @@ use Pod::Usage;
+ use XML::Simple;
+ use Data::Dumper;
+
++=head1 NAME
++
++nmica2meme - Convert a file containing list of TFBS motif matrices from
++
+ =head1 SYNOPSIS
+
+ nmica2meme [options]
Modified: trunk/packages/meme/trunk/debian/rules
===================================================================
--- trunk/packages/meme/trunk/debian/rules 2013-02-12 15:24:33 UTC (rev
12990)
+++ trunk/packages/meme/trunk/debian/rules 2013-02-12 15:40:45 UTC (rev
12991)
@@ -100,22 +100,30 @@
help2man --no-info --help-option="''" --no-discard-stderr \
--name='computes the distribution of priors from a file in MEME PSP
format' --version-string="$(version)" \
$(CURDIR)/debian/$(pkg)/usr/bin/compute-prior-dist >
$(mandir)/compute-prior-dist.1
-# Very dirty trick to drain information via help2man even if binary outputs to
stderr
binname=create-priors ; \
tmpbin=$(CURDIR)/debian/tmp-man/$$binname ; \
echo "#!/bin/sh" > $$tmpbin ; echo "cat <<EOT" >> $$tmpbin;
$(CURDIR)/debian/$(pkg)/usr/bin/$$binname 2>> $$tmpbin; chmod 755 $$tmpbin; \
help2man --no-info --help-option="''" --no-discard-stderr \
--name='converts numeric values defined with respect to one or more
DNA sequences into a probabilistic prior' --version-string="$(version)" \
$$tmpbin > $(mandir)/$${binname}.1
+ binname=draw-mhmm ; \
+ tmpbin=$(CURDIR)/debian/tmp-man/$$binname ; \
+ echo "#!/bin/sh" > $$tmpbin ; echo "cat <<EOT" >> $$tmpbin;
$(CURDIR)/debian/$(pkg)/usr/bin/$$binname 2>> $$tmpbin; chmod 755 $$tmpbin; \
help2man --no-info --help-option="''" --no-discard-stderr \
--name='convert a given Meta-MEME hidden Markov model into a format
suitable for input to graphviz' --version-string="$(version)" \
- $(CURDIR)/debian/$(pkg)/usr/bin/draw-mhmm >
$(mandir)/draw-mhmm.1
+ $$tmpbin > $(mandir)/$${binname}.1
+ binname=dust ; \
+ tmpbin=$(CURDIR)/debian/tmp-man/$$binname ; \
+ echo "#!/bin/sh" > $$tmpbin ; echo "cat <<EOT" >> $$tmpbin;
$(CURDIR)/debian/$(pkg)/usr/bin/$$binname 2>> $$tmpbin; chmod 755 $$tmpbin; \
help2man --no-info --help-option="''" --no-discard-stderr \
--name='some component of MEME package without specific
description' --version-string="$(version)" \
- $(CURDIR)/debian/$(pkg)/usr/bin/dust > $(mandir)/dust.1
+ $$tmpbin > $(mandir)/$${binname}.1
+ binname=fasta-io ; \
+ tmpbin=$(CURDIR)/debian/tmp-man/$$binname ; \
+ echo "#!/bin/sh" > $$tmpbin ; echo "cat <<EOT" >> $$tmpbin;
$(CURDIR)/debian/$(pkg)/usr/bin/$$binname 2>> $$tmpbin; chmod 755 $$tmpbin; \
help2man --no-info --help-option="''" --no-discard-stderr \
--name='read a sequence file in FASTA format and writes it to
standard out' --version-string="$(version)" \
- $(CURDIR)/debian/$(pkg)/usr/bin/fasta-io >
$(mandir)/fasta-io.1
+ $$tmpbin > $(mandir)/$${binname}.1
# Remove those manpages with zero bytes where pod2man failed in doing a
proper job
find $(mandir) -size 0 -delete
rm -rf debian/tmp-man
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
