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The "DebianMed/PredictProtein" page has been changed by LaszloKajan: http://wiki.debian.org/DebianMed/PredictProtein Comment: Initial version of page New page: #language en ~-[[DebianWiki/EditorGuide#translation|Translation(s)]]: none-~ ---- This page will help you get started with PredictProtein for Debian and derivatives, e.g. [[http://nebc.nerc.ac.uk/tools/bio-linux/bio-linux-7-info|Bio-Linux]]. Detailed documentation of PredictProtein is available at the [[https://rostlab.org/owiki/index.php/PredictProtein_-_Documentation|Rost Lab]]. ## If your page gets really long, uncomment this Table of Contents ## <<TableOfContents(2)>> == Installation == {{{ apt-get install predictprotein }}} === Databases === PredictProtein needs databases to function. The easiest and most convenient is to download these as a compressed archive from the [[http://rostlab.org/services/ppmi/|PredictProtein web site]]. All of the databases in the archive are available publicly, the archive is provided for convenience only. The link to the database archive download is hidden until you click 'Click here to download a Debian based image'. Read `man predictprotein` if you want to choose your databases. {{{ # You will need up to 30GB free space in ${YOUR_DATA_ROOT}/rost_db $ wget 'http://www.rostlab.org/services/ppmi/download_file?format=gzip&file_to_download=db' --continue -O /tmp/rostlab-data.txz $ mkdir -p ${YOUR_DATA_ROOT}/rost_db && tar -xvJf /tmp/rostlab-data.txz -C ${YOUR_DATA_ROOT}/rost_db }}} == Configuration == == Test run == == See also == ---- ## If this page belongs to an existing Category, add it below. ## CategorySomething | CategoryAnother _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
