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The "DebianMed/PredictProtein" page has been changed by LaszloKajan: http://wiki.debian.org/DebianMed/PredictProtein?action=diff&rev1=2&rev2=3 Comment: added test run command == Installation == {{{ - apt-get install predictprotein + $ apt-get install predictprotein }}} === Databases === @@ -27, +27 @@ Create `/etc/predictproteinrc` with these values (replace `${YOUR_DATA_ROOT}` with the actual value): {{{ # Override default predictprotein configuration in /usr/share/predictprotein/predictproteinrc.default with these values: + [predictprotein] bigblastdb=${YOUR_DATA_ROOT}/rostlab-data/data/big/big big80blastdb=${YOUR_DATA_ROOT}/rostlab-data/data/big/big_80 prositedat=${YOUR_DATA_ROOT}/rostlab-data/data/prosite/prosite.dat @@ -38, +39 @@ }}} == Test run == + Running this example will take a few minutes: + {{{ + $ predictprotein --seqfile /usr/share/doc/predictprotein/examples/tquick.fasta --output-dir /tmp/pp + }}} == See also == - + * [[https://rostlab.org/owiki/index.php/PredictProtein_-_Documentation|PredictProtein Documentation]] ---- ## If this page belongs to an existing Category, add it below. ## CategorySomething | CategoryAnother _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
