Author: tille Date: 2013-06-07 06:48:11 +0000 (Fri, 07 Jun 2013) New Revision: 13859
Added: trunk/packages/mira/trunk/debian/mira.1 Modified: trunk/packages/mira/trunk/debian/changelog Log: Wrote manpage for main program Modified: trunk/packages/mira/trunk/debian/changelog =================================================================== --- trunk/packages/mira/trunk/debian/changelog 2013-06-07 06:34:10 UTC (rev 13858) +++ trunk/packages/mira/trunk/debian/changelog 2013-06-07 06:48:11 UTC (rev 13859) @@ -21,6 +21,7 @@ [ Andreas Tille ] * delete debian/README.source which is outdated / wrong + * debian/mira.1: Wrote manpage for main program -- Andreas Tille <[email protected]> Fri, 07 Jun 2013 08:34:21 +0200 Added: trunk/packages/mira/trunk/debian/mira.1 =================================================================== --- trunk/packages/mira/trunk/debian/mira.1 (rev 0) +++ trunk/packages/mira/trunk/debian/mira.1 2013-06-07 06:48:11 UTC (rev 13859) @@ -0,0 +1,53 @@ +.TH 3.9.17 "1" "June 2013" "User Commands" +.SH NAME +mira \- The Genome and EST Sequence Assembly System +.SH DESCRIPTION +The mira genome fragment assembler is a specialised assembler for +sequencing projects classified as 'hard' due to high number of similar +repeats. For expressed sequence tags (ESTs) transcripts, miraEST is +specialised on reconstructing pristine mRNA transcripts while +detecting and classifying single nucleotide polymorphisms (SNP) +occuring in different variations thereof. +.PP +The assembler is routinely used for such various tasks as mutation +detection in different cell types, similarity analysis of transcripts +between organisms, and pristine assembly of sequences from various +sources for oligo design in clinical microarray experiments. +.PP +The purpose of the \fBmira\fR executable is to assemble sequencing data. +.SH SYNOPSIS +mira +[\fIOPTION\fR] manifest_file [\fImanifest_file\fR] ... +.SH OPTIONS +.TP +\fB\-c\fR / \fB\-\-cwd=\fRdirectory +Change working directory +.TP +\fB\-r\fR / \fB\-\-resume\fR +Resume an interrupted assembly +.TP +\fB\-h\fR / \fB\-\-help\fR +Print short help and exit +.TP +\fB\-v\fR / \fB\-\-version\fR +Print version and exit +.SH "SEE ALSO" +A more extensive documentation is provided in the mira-doc package and can be found at +/usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html. +.PP +You can also subscribe one of the MIRA mailing lists at +.IP +http://www.chevreux.org/mira_mailinglists.html +.PP +After subscribing, mail general questions to the MIRA talk mailing list: +.IP [email protected] +.SH BUGS +To report bugs or ask for features, please use the new ticketing system at: +.IP +http://sourceforge.net/apps/trac/mira\-assembler/ +.SH AUTHOR +The author of the mira code is Bastien Chevreux <[email protected]> +.PP +This manual page was written by Andreas Tille <[email protected]> but can be freely used for any other +distribution. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
