Author: tille
Date: 2013-07-30 19:32:08 +0000 (Tue, 30 Jul 2013)
New Revision: 14281
Added:
trunk/packages/mothur/trunk/debian/patches/uchime_hardening.patch
Modified:
trunk/packages/mothur/trunk/debian/changelog
trunk/packages/mothur/trunk/debian/patches/series
Log:
Hardening for uchime
Modified: trunk/packages/mothur/trunk/debian/changelog
===================================================================
--- trunk/packages/mothur/trunk/debian/changelog 2013-07-30 18:07:17 UTC
(rev 14280)
+++ trunk/packages/mothur/trunk/debian/changelog 2013-07-30 19:32:08 UTC
(rev 14281)
@@ -10,6 +10,7 @@
- cme fix dpkg-control
- debhelper 9
- use anonscm for Vcs fields
+ * debian/patches/uchime_hardening.patch: Hardening for uchime
-- Andreas Tille <[email protected]> Tue, 30 Jul 2013 14:32:44 +0200
Modified: trunk/packages/mothur/trunk/debian/patches/series
===================================================================
--- trunk/packages/mothur/trunk/debian/patches/series 2013-07-30 18:07:17 UTC
(rev 14280)
+++ trunk/packages/mothur/trunk/debian/patches/series 2013-07-30 19:32:08 UTC
(rev 14281)
@@ -4,3 +4,4 @@
catchall_fix.patch
build_without_tty.patch
uchime_link_dynamically
+uchime_hardening.patch
Added: trunk/packages/mothur/trunk/debian/patches/uchime_hardening.patch
===================================================================
--- trunk/packages/mothur/trunk/debian/patches/uchime_hardening.patch
(rev 0)
+++ trunk/packages/mothur/trunk/debian/patches/uchime_hardening.patch
2013-07-30 19:32:08 UTC (rev 14281)
@@ -0,0 +1,17 @@
+Author: Andreas Tille <[email protected]>
+LastChanged: Tue, 30 Jul 2013 21:21:02 +0200
+Description: Propagate hardening options to uchime
+
+--- a/makefile
++++ b/makefile
+@@ -105,7 +105,9 @@ mothur : fortranSource $(OBJECTS) uchime
+ strip mothur
+
+ uchime:
+- cd uchime_src && ./mk && mv uchime .. && cd ..
++ echo ENV_GCC_OPTS="$(CPPFLAGS)"
++ echo ENV_LINK_OPTS="$(LDFLAGS)"
++ cd uchime_src && ENV_GCC_OPTS="$(CPPFLAGS)" ENV_LINK_OPTS="$(LDFLAGS)"
./mk && mv uchime .. && cd ..
+
+ fortranSource:
+ ${FORTAN_COMPILER} -c $(FORTRAN_FLAGS) *.f
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