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commit 652324fb291b290c069da1a596bcfdfdd00a3d9b Author: Andreas Tille <[email protected]> Date: Fri Sep 13 09:08:05 2013 +0200 Deal wiht modules moved to BioLinux --- debian/changelog | 12 ++++++++++++ debian/rules | 14 +++++++++++--- 2 files changed, 23 insertions(+), 3 deletions(-) diff --git a/debian/changelog b/debian/changelog index 71bef53..a883455 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,15 @@ +grinder (0.5.3-3) UNRELEASED; urgency=low + + * debian/rules: + - Move more duplicates from libbio-perl-perl out of the way + Closes: #722650 + Remark: It seems libbio-perl-perl is integrating actively code + from grinder and includes it into their distribution. Finally + now are all modules from the Bio directory integrated into + BioPerl. + + -- Andreas Tille <[email protected]> Fri, 13 Sep 2013 08:25:06 +0200 + grinder (0.5.3-2) unstable; urgency=low * debian/rules: diff --git a/debian/rules b/debian/rules index e829529..7972eb6 100755 --- a/debian/rules +++ b/debian/rules @@ -37,20 +37,28 @@ MOREFILE = $(MANDIR)/more.$(SECTION) dh $@ override_dh_auto_configure: - # some files are duplicates from BioPerl and create conflicts when trying - # to install the package. So the are moved out of the way in the beginning - # and droped into place in the clean target again + # It seems libbio-perl-perl is integrating actively code + # from grinder and includes it into their distribution. Finally + # now are all modules from the Bio directory integrated into + # BioPerl. The single file moving was kept just for the reason + # to have some template once a new Grinder version might come up + # with new code mkdir -p _disposal/Bio # MYMETA.yml will be changed and not reverted in clean target - use the chance to conserve it here cp -a MYMETA.yml _disposal mv lib/Bio/PrimarySeq*.pm _disposal/Bio mkdir -p _disposal/Bio/DB mv lib/Bio/DB/Fasta.pm _disposal/Bio/DB + mv lib/Bio/DB/IndexedBase.pm _disposal/Bio/DB mkdir -p _disposal/Bio/Seq mv lib/Bio/Seq/SeqFastaSpeedFactory.pm _disposal/Bio/Seq + mv lib/Bio/Seq/SimulatedRead.pm _disposal/Bio/Seq mkdir -p _disposal/Bio/SeqFeature + mv lib/Bio/SeqFeature/Amplicon.pm _disposal/Bio/SeqFeature mv lib/Bio/SeqFeature/Primer.pm _disposal/Bio/SeqFeature + mv lib/Bio/SeqFeature/SubSeq.pm _disposal/Bio/SeqFeature mkdir -p _disposal/Bio/Tools + mv lib/Bio/Tools/AmpliconSearch.pm _disposal/Bio/Tools mv lib/Bio/Tools/IUPAC.pm _disposal/Bio/Tools dh_auto_configure -- Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/grinder.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
