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plessy pushed a change to branch upstream
in repository picard-tools.
from d02872e Imported Upstream version 1.100
new ff4fd82 Imported Upstream version 1.101
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
build.xml | 2 +-
src/java/net/sf/picard/pedigree/PedFile.java | 99 +++++++++++
src/java/net/sf/picard/pedigree/PedTrio.java | 45 +++++
src/java/net/sf/picard/pedigree/Sex.java | 26 +++
src/java/net/sf/picard/util/MathUtil.java | 17 ++
src/java/net/sf/samtools/util/Iso8601Date.java | 2 +-
.../net/sf/samtools/util/RelativeIso8601Date.java | 187 ++++++++++++++++++++
.../org/broadinstitute/variant/vcf/VCFCodec.java | 4 +-
.../broadinstitute/variant/vcf/VCFFileReader.java | 40 +++--
.../sf/samtools/util/RelativeIso8601DateTest.java | 39 ++++
10 files changed, 442 insertions(+), 19 deletions(-)
create mode 100644 src/java/net/sf/picard/pedigree/PedFile.java
create mode 100644 src/java/net/sf/picard/pedigree/PedTrio.java
create mode 100644 src/java/net/sf/picard/pedigree/Sex.java
create mode 100644 src/java/net/sf/samtools/util/RelativeIso8601Date.java
create mode 100644
src/tests/java/net/sf/samtools/util/RelativeIso8601DateTest.java
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