Author: tille
Date: 2013-11-04 22:34:27 +0000 (Mon, 04 Nov 2013)
New Revision: 15095
Added:
trunk/packages/R/r-bioc-xvector/trunk/debian/patches/define_missing_struct__new_htab.patch
Modified:
trunk/packages/R/r-bioc-xvector/trunk/debian/control
trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series
Log:
Need to update biocgenerics before this package can be built
Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/control 2013-11-04
22:06:15 UTC (rev 15094)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/control 2013-11-04
22:34:27 UTC (rev 15095)
@@ -6,7 +6,7 @@
Build-Depends: debhelper (>= 9),
cdbs,
r-base-dev,
- r-bioc-biocgenerics,
+ r-bioc-biocgenerics (>= 0.7.2),
r-bioc-iranges
Standards-Version: 3.9.4
Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-xvector/trunk/
Added:
trunk/packages/R/r-bioc-xvector/trunk/debian/patches/define_missing_struct__new_htab.patch
===================================================================
---
trunk/packages/R/r-bioc-xvector/trunk/debian/patches/define_missing_struct__new_htab.patch
(rev 0)
+++
trunk/packages/R/r-bioc-xvector/trunk/debian/patches/define_missing_struct__new_htab.patch
2013-11-04 22:34:27 UTC (rev 15095)
@@ -0,0 +1,23 @@
+Author: Andreas Tille <[email protected]>
+LastChanged: Mon, 04 Nov 2013 17:24:35 +0100
+Description: Fix some C issues
+
+--- XVector.orig/src/XVector.h
++++ XVector/src/XVector.h
+@@ -691,3 +691,5 @@
+ SEXP method
+ );
+
++struct htab new_htab(int n);
++
+--- XVector.orig/src/SharedVector_class.c
++++ XVector/src/SharedVector_class.c
+@@ -234,7 +234,7 @@
+ nelt = INTEGER(width)[0];
+
+ PROTECT(ans = NEW_INTEGER(1));
+- INTEGER(ans)[0] = vector_memcmp(tag1, offset1, tag2, offset2, nelt);
++ INTEGER(ans)[0] = _vector_memcmp(tag1, offset1, tag2, offset2, nelt);
+ UNPROTECT(1);
+ return ans;
+ }
Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series 2013-11-04
22:06:15 UTC (rev 15094)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/patches/series 2013-11-04
22:34:27 UTC (rev 15095)
@@ -1 +1,2 @@
prefer_iranges_defines_to_avoid_duplicate_definition.patch
+define_missing_struct__new_htab.patch
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
