This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository r-bioc-cummerbund.
commit 170677487d3b16de7f0fe7e3bb71253e3b47a6a0 Author: Andreas Tille <[email protected]> Date: Sat Dec 28 17:24:34 2013 +0100 Imported Upstream version 2.4.1 --- DESCRIPTION | 4 ++-- build/vignette.rds | Bin 0 -> 302 bytes inst/doc/cummeRbund-example-workflow.pdf | Bin 198250 -> 198250 bytes inst/doc/cummeRbund-manual.R | 2 +- inst/doc/cummeRbund-manual.Rnw | 2 +- inst/doc/cummeRbund-manual.pdf | Bin 1545261 -> 1545258 bytes 6 files changed, 4 insertions(+), 4 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 64b4663..24271c3 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: cummeRbund Title: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data. -Version: 2.2.0 +Version: 2.4.1 Date: 2012-05-04 Author: L. Goff, C. Trapnell, D. Kelley Description: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations. @@ -20,4 +20,4 @@ biocViews: HighThroughputSequencing, HighThroughputSequencingData, RNAseq, RNAseqData, GeneExpression, DifferentialExpression, Infrastructure, DataImport, DataRepresentation, Visualization, Bioinformatics, Clustering, MultipleComparisons, QualityControl -Packaged: 2013-04-04 08:23:26 UTC; biocbuild +Packaged: 2013-12-13 05:38:16 UTC; biocbuild diff --git a/build/vignette.rds b/build/vignette.rds new file mode 100644 index 0000000..08663be Binary files /dev/null and b/build/vignette.rds differ diff --git a/inst/doc/cummeRbund-example-workflow.pdf b/inst/doc/cummeRbund-example-workflow.pdf index 5540834..9642067 100644 Binary files a/inst/doc/cummeRbund-example-workflow.pdf and b/inst/doc/cummeRbund-example-workflow.pdf differ diff --git a/inst/doc/cummeRbund-manual.R b/inst/doc/cummeRbund-manual.R index 41d08cf..ffb4ed8 100644 --- a/inst/doc/cummeRbund-manual.R +++ b/inst/doc/cummeRbund-manual.R @@ -549,7 +549,7 @@ biomTrack<-BiomartGeneRegionTrack(genome=genome,chromosome=as.character(myChr), trackList<-c(trackList,biomTrack) conservation <- UcscTrack(genome = genome, chromosome = myChr, - track = "Conservation", table = "phyloP46wayPlacental", + track = "Conservation", table = "phyloP100wayAll", from = myStart-2000, to = myEnd+2000, trackType = "DataTrack", start = "start", end = "end", data = "score", type = "hist", window = "auto", col.histogram = "darkblue", diff --git a/inst/doc/cummeRbund-manual.Rnw b/inst/doc/cummeRbund-manual.Rnw index d1e69a7..25de050 100644 --- a/inst/doc/cummeRbund-manual.Rnw +++ b/inst/doc/cummeRbund-manual.Rnw @@ -929,7 +929,7 @@ biomTrack<-BiomartGeneRegionTrack(genome=genome,chromosome=as.character(myChr), trackList<-c(trackList,biomTrack) conservation <- UcscTrack(genome = genome, chromosome = myChr, - track = "Conservation", table = "phyloP46wayPlacental", + track = "Conservation", table = "phyloP100wayAll", from = myStart-2000, to = myEnd+2000, trackType = "DataTrack", start = "start", end = "end", data = "score", type = "hist", window = "auto", col.histogram = "darkblue", diff --git a/inst/doc/cummeRbund-manual.pdf b/inst/doc/cummeRbund-manual.pdf index 63cc480..3fde9f0 100644 Binary files a/inst/doc/cummeRbund-manual.pdf and b/inst/doc/cummeRbund-manual.pdf differ -- Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-cummerbund.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
