This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository permute.
commit d6628f49743969b1e8454a02f1f4a587996489a6 Merge: c332099 bbc1a7e Author: Andreas Tille <[email protected]> Date: Tue Jan 21 11:06:14 2014 +0100 Merge tag 'upstream/0.8-0' Upstream version 0.8-0 DESCRIPTION | 35 +- MD5 | 95 +- NAMESPACE | 202 +++- R/Blocks.R | 13 +- R/Plots.R | 27 + R/Within.R | 24 +- R/allFree.R | 17 +- R/allPerms.R | 268 +++-- R/allStrata.R | 27 +- R/as.matrix.permutationMatrix.R | 10 + R/check.R | 94 ++ R/fixupCall.R | 12 + R/getFoo-methods.R | 426 ++++++- R/how.R | 55 + R/numPerms.R | 239 ++-- R/permCheck.R | 62 +- R/permControl.R | 15 - R/permuplot.R | 6 +- R/permute-deprecated.R | 43 + R/permute.R | 2 +- R/{print.permCheck.R => print.check.R} | 0 R/print.how.R | 89 ++ R/print.permControl.R | 54 - R/print.permutationMatrix.R | 84 ++ R/print.summary.allPerms.R | 5 +- ...t.summary.permCheck.R => print.summary.check.R} | 0 R/setFoo-methods.R | 408 +++++++ R/shuffle-utils.R | 12 + R/shuffle.R | 20 +- R/shuffle2.R | 122 ++ R/shuffleSet.R | 2 +- R/shuffleSet2.R | 205 ++++ R/{summary.permCheck.R => summary.check.R} | 0 R/update.Plots.R | 62 + R/update.how.R | 73 ++ build/vignette.rds | Bin 0 -> 230 bytes inst/COPYRIGHTS | 16 + inst/ChangeLog | 274 ++++- inst/NEWS.Rd | 86 ++ inst/TODO.md | 84 ++ inst/doc/permutations.R | 348 ++++++ inst/doc/permutations.Rnw | 368 +++++- inst/doc/permutations.pdf | Bin 122867 -> 294805 bytes inst/tests/.Rhistory | 36 - inst/tests/test-check.R | 25 + inst/tests/test-shuffle.R | 15 +- inst/tests/test-shuffleSet.R | 42 + man/allPerms.Rd | 40 +- man/{allUtilis.Rd => allUtils.Rd} | 5 +- man/check.Rd | 153 +++ man/get-methods.Rd | 188 +++ man/how.Rd | 130 +++ man/numPerms.Rd | 31 +- man/permCheck-deprecated.Rd | 66 ++ man/permCheck.Rd | 280 ----- man/permControl-deprecated.Rd | 82 ++ man/permute-deprecated.Rd | 25 + man/set-methods.Rd | 147 +++ man/shuffle-utils.Rd | 6 +- man/shuffle.Rd | 174 +-- man/shuffleSet.Rd | 97 +- tests/Examples/permute-Ex.Rout.save | 1219 ++++++++++++++++++++ vignettes/Z.cls | 2 +- vignettes/permutations.Rnw | 368 +++++- vignettes/permute.bib | 33 + 65 files changed, 6062 insertions(+), 1086 deletions(-) -- Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/permute.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
