Author: tille Date: 2014-01-28 17:39:36 +0000 (Tue, 28 Jan 2014) New Revision: 15876
Added: trunk/packages/edtsurf/ trunk/packages/edtsurf/trunk/ trunk/packages/edtsurf/trunk/debian/ trunk/packages/edtsurf/trunk/debian/README.Debian trunk/packages/edtsurf/trunk/debian/README.source trunk/packages/edtsurf/trunk/debian/changelog trunk/packages/edtsurf/trunk/debian/compat trunk/packages/edtsurf/trunk/debian/control trunk/packages/edtsurf/trunk/debian/copyright trunk/packages/edtsurf/trunk/debian/docs trunk/packages/edtsurf/trunk/debian/edtsurf.dirs trunk/packages/edtsurf/trunk/debian/edtsurf.install trunk/packages/edtsurf/trunk/debian/patches/ trunk/packages/edtsurf/trunk/debian/patches/CFLAGS_missing_in_Makefile.patch trunk/packages/edtsurf/trunk/debian/patches/series trunk/packages/edtsurf/trunk/debian/rules trunk/packages/edtsurf/trunk/debian/source/ trunk/packages/edtsurf/trunk/debian/source/format trunk/packages/edtsurf/trunk/debian/upstream Log: edtsurf claimed to be in Debian Med SVN but was actually not ... commiting Added: trunk/packages/edtsurf/trunk/debian/README.Debian =================================================================== --- trunk/packages/edtsurf/trunk/debian/README.Debian (rev 0) +++ trunk/packages/edtsurf/trunk/debian/README.Debian 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,3 @@ +This package was not yet fully tested. Please send comments. +Many thanks +Steffen Added: trunk/packages/edtsurf/trunk/debian/README.source =================================================================== --- trunk/packages/edtsurf/trunk/debian/README.source (rev 0) +++ trunk/packages/edtsurf/trunk/debian/README.source 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,7 @@ +edtsurf for Debian +------------------ + +The binary was removed from the source tree. + + + Added: trunk/packages/edtsurf/trunk/debian/changelog =================================================================== --- trunk/packages/edtsurf/trunk/debian/changelog (rev 0) +++ trunk/packages/edtsurf/trunk/debian/changelog 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,11 @@ +edtsurf (0.2009-) UNRELEASED; urgency=medium + + * Take over package into team maintenance + + -- Andreas Tille <[email protected]> Tue, 28 Jan 2014 18:40:21 +0100 + +edtsurf (0.2009-1) unstable; urgency=low + + * Initial release (Closes: #689163) + + -- Steffen Moeller <[email protected]> Sat, 29 Sep 2012 16:54:15 +0200 Added: trunk/packages/edtsurf/trunk/debian/compat =================================================================== --- trunk/packages/edtsurf/trunk/debian/compat (rev 0) +++ trunk/packages/edtsurf/trunk/debian/compat 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1 @@ +8 Added: trunk/packages/edtsurf/trunk/debian/control =================================================================== --- trunk/packages/edtsurf/trunk/debian/control (rev 0) +++ trunk/packages/edtsurf/trunk/debian/control 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,20 @@ +Source: edtsurf +Section: science +Priority: extra +Maintainer: Steffen Moeller <[email protected]> +Build-Depends: debhelper (>= 8.0.0), dpkg-dev (>= 1.16.1~) +Standards-Version: 3.9.4 +Homepage: http://zhanglab.ccmb.med.umich.edu/EDTSurf/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/edtsurf/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/edtsurf/trunk/ + +Package: edtsurf +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Suggests: meshlab +Description: triangulated mesh surfaces for protein structures + EDTSurf is a open source program to construct triangulated surfaces + for macromolecules. It generates three major macromolecular surfaces: + van der Waals surface, solvent-accessible surface and molecular surface + (solvent-excluded surface). EDTsurf also identifies cavities which are + inside of macromolecules. Added: trunk/packages/edtsurf/trunk/debian/copyright =================================================================== --- trunk/packages/edtsurf/trunk/debian/copyright (rev 0) +++ trunk/packages/edtsurf/trunk/debian/copyright 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,32 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: edtsurf +Source: http://zhanglab.ccmb.med.umich.edu/EDTSurf + +Files: * +Copyright: 2009 Dong Xu and Yang Zhang <[email protected]> +License: + Permission to use, copy, modify, and distribute this program for + any purpose, with or without fee, is hereby granted, provided that + the notices on the head, the reference information, and this + copyright notice appear in all copies or substantial portions of + the Software. It is provided "as is" without express or implied + warranty. + +Files: debian/* +Copyright: 2012 Steffen Moeller <[email protected]> +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/> + . + On Debian systems, the complete text of the GNU General + Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". Added: trunk/packages/edtsurf/trunk/debian/docs =================================================================== Added: trunk/packages/edtsurf/trunk/debian/edtsurf.dirs =================================================================== --- trunk/packages/edtsurf/trunk/debian/edtsurf.dirs (rev 0) +++ trunk/packages/edtsurf/trunk/debian/edtsurf.dirs 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1 @@ +usr/bin Added: trunk/packages/edtsurf/trunk/debian/edtsurf.install =================================================================== --- trunk/packages/edtsurf/trunk/debian/edtsurf.install (rev 0) +++ trunk/packages/edtsurf/trunk/debian/edtsurf.install 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1 @@ +EDTSurf usr/bin Added: trunk/packages/edtsurf/trunk/debian/patches/CFLAGS_missing_in_Makefile.patch =================================================================== --- trunk/packages/edtsurf/trunk/debian/patches/CFLAGS_missing_in_Makefile.patch (rev 0) +++ trunk/packages/edtsurf/trunk/debian/patches/CFLAGS_missing_in_Makefile.patch 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,19 @@ +Index: edtsurf-0.2009/Makefile +=================================================================== +--- edtsurf-0.2009.orig/Makefile ++++ edtsurf-0.2009/Makefile +@@ -1,9 +1,9 @@ + EDTSurf : ParsePDB.o ProteinSurface.o EDTSurf.o +- g++ ParsePDB.o ProteinSurface.o EDTSurf.o -o EDTSurf ++ g++ $(LDFLAGS) ParsePDB.o ProteinSurface.o EDTSurf.o -o EDTSurf + rm *.o + ProteinSurface.o : ProteinSurface.cpp +- g++ -c ProteinSurface.cpp -o ProteinSurface.o ++ g++ $(CPPFLAGS) $(CXXFLAGS) -c ProteinSurface.cpp -o ProteinSurface.o + ParsePDB.o : ParsePDB.cpp +- g++ -c ParsePDB.cpp -o ParsePDB.o ++ g++ $(CPPFLAGS) $(CXXFLAGS) -c ParsePDB.cpp -o ParsePDB.o + EDTSurf.o : EDTSurf.cpp +- g++ -c EDTSurf.cpp -o EDTSurf.o +\ No newline at end of file ++ g++ $(CPPFLAGS) $(CXXFLAGS) -c EDTSurf.cpp -o EDTSurf.o Added: trunk/packages/edtsurf/trunk/debian/patches/series =================================================================== --- trunk/packages/edtsurf/trunk/debian/patches/series (rev 0) +++ trunk/packages/edtsurf/trunk/debian/patches/series 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1 @@ +CFLAGS_missing_in_Makefile.patch Added: trunk/packages/edtsurf/trunk/debian/rules =================================================================== --- trunk/packages/edtsurf/trunk/debian/rules (rev 0) +++ trunk/packages/edtsurf/trunk/debian/rules 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,17 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +#export DEB_BUILD_MAINT_OPTIONS = hardening=+format,+bindnow +DPKG_EXPORT_BUILDFLAGS = 1 +include /usr/share/dpkg/buildflags.mk + + +%: + dh $@ + +override_dh_clean: + dh_clean + rm -f EDTSurf Property changes on: trunk/packages/edtsurf/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/edtsurf/trunk/debian/source/format =================================================================== --- trunk/packages/edtsurf/trunk/debian/source/format (rev 0) +++ trunk/packages/edtsurf/trunk/debian/source/format 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/edtsurf/trunk/debian/upstream =================================================================== --- trunk/packages/edtsurf/trunk/debian/upstream (rev 0) +++ trunk/packages/edtsurf/trunk/debian/upstream 2014-01-28 17:39:36 UTC (rev 15876) @@ -0,0 +1,14 @@ +Contact: Yang Zhang <[email protected]> +Homepage: http://zhanglab.ccmb.med.umich.edu/EDTSurf/ +Name: EDTSurf +Reference: + AUTHOR: Dong Xu and Yang Zhang + TITLE: + Generating Triangulated Macromolecular Surfaces by Euclidean Distance Transform. + JOURNAL: PLoS ONE + YEAR: 2009 + PAGES: e8140 + VOLUME: 4 + NUMBER: 12 + eprint: http://zhanglab.ccmb.med.umich.edu/EDTSurf/EDTSurf.pdf + DOI: 10.1371/journal.pone.0008140 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
