Author: tille
Date: 2014-02-12 15:58:38 +0000 (Wed, 12 Feb 2014)
New Revision: 16019
Added:
trunk/packages/R/r-cran-segmented/
trunk/packages/R/r-cran-segmented/trunk/
trunk/packages/R/r-cran-segmented/trunk/debian/
trunk/packages/R/r-cran-segmented/trunk/debian/README.test
trunk/packages/R/r-cran-segmented/trunk/debian/changelog
trunk/packages/R/r-cran-segmented/trunk/debian/compat
trunk/packages/R/r-cran-segmented/trunk/debian/control
trunk/packages/R/r-cran-segmented/trunk/debian/copyright
trunk/packages/R/r-cran-segmented/trunk/debian/rules
trunk/packages/R/r-cran-segmented/trunk/debian/source/
trunk/packages/R/r-cran-segmented/trunk/debian/source/format
trunk/packages/R/r-cran-segmented/trunk/debian/upstream
trunk/packages/R/r-cran-segmented/trunk/debian/watch
Log:
Inject r-cran-segmented as precondition for some other R package in DebiChem
Added: trunk/packages/R/r-cran-segmented/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/README.test
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/README.test 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1,7 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by loading it into R with the command
+‘library(segmented)’ in order to confirm its integrity.
+
+ -- Andreas Tille <[email protected]> Wed, 12 Feb 2014 16:47:31 +0100
Added: trunk/packages/R/r-cran-segmented/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/changelog
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/changelog 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1,5 @@
+r-cran-segmented (0.3-0.0-3) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #??).
+
+ -- Andreas Tille <[email protected]> Wed, 12 Feb 2014 16:47:31 +0100
Added: trunk/packages/R/r-cran-segmented/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/compat
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/compat 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-cran-segmented/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/control
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/control 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1,24 @@
+Source: r-cran-segmented
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team
<[email protected]>
+Uploaders: Andreas Tille <[email protected]>
+Build-Depends: debhelper (>= 9.0),
+ cdbs,
+ r-base-dev
+Standards-Version: 3.9.5
+Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-segmented/trunk/
+Vcs-Svn:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-segmented/trunk/
+Homepage: http://cran.r-project.org/web/packages/segmented/
+
+Package: r-cran-segmented
+Architecture: all
+Depends: ${misc:Depends},
+ ${R:Depends}
+Description: GNU R segmented relationships in regression models
+ This GNU R package provides segmented relationships in regression
+ models with breakpoints/changepoints estimation.
+ .
+ Given a (generalized) linear model, segmented ‘updates’ the model by
+ adding one or more segmented relationships. Several variables with
+ multiple breakpoints are allowed.
Added: trunk/packages/R/r-cran-segmented/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/copyright
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/copyright 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: segmented
+Upstream-Contact: Vito M. R. Muggeo <[email protected]>
+Source: http://cran.r-project.org/web/packages/segmented/
+
+Files: *
+Copyright: 2012-2013 Vito M. R. Muggeo <[email protected]>
+License: GPLv2+
+
+Files: debian/*
+Copyright: 2014 Andreas Tille <[email protected]>
+License: GPLv2+
+
+License: GPLv2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL-2'.
Added: trunk/packages/R/r-cran-segmented/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/rules
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/rules 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
Property changes on: trunk/packages/R/r-cran-segmented/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-cran-segmented/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/source/format
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/source/format
2014-02-12 15:58:38 UTC (rev 16019)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-cran-segmented/trunk/debian/upstream
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/upstream
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/upstream 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1,12 @@
+Reference:
+ Author: Vito M.R. Muggeo
+ Title: Estimating regression models with unknown break-points
+ Journal: Statistics in Medicine
+ Year: 2003
+ Volume: 22
+ Number: 19
+ Pages: 3055--3071
+ DOI: 10.1002/sim.1545
+ PMID: 12973787
+ URL: http://onlinelibrary.wiley.com/doi/10.1002/sim.1545/abstract
+ eprint: http://onlinelibrary.wiley.com/doi/10.1002/sim.1545/pdf
Added: trunk/packages/R/r-cran-segmented/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-segmented/trunk/debian/watch
(rev 0)
+++ trunk/packages/R/r-cran-segmented/trunk/debian/watch 2014-02-12
15:58:38 UTC (rev 16019)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/segmented_([-\d.]*)\.tar\.gz
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