Author: tille Date: 2014-02-13 15:49:25 +0000 (Thu, 13 Feb 2014) New Revision: 16025
Modified: trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1 trunk/packages/zhanglab/tm-align/trunk/debian/changelog trunk/packages/zhanglab/tm-align/trunk/debian/control trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source trunk/packages/zhanglab/tm-align/trunk/debian/rules trunk/packages/zhanglab/tm-align/trunk/debian/watch Log: Commit status of latest upload Modified: trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1 =================================================================== --- trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1 2014-02-13 15:47:08 UTC (rev 16024) +++ trunk/packages/zhanglab/tm-align/trunk/debian/TMalign.1 2014-02-13 15:49:25 UTC (rev 16025) @@ -56,8 +56,8 @@ The output files serve as scripts to the program .IR rasmol. To view the superimposed structures of the aligned regions call - 'rasmol -script TM.sup' To view the superimposed structures of all regions - 'rasmol -script TM.sup_all'. + 'rasmol \-script TM.sup' To view the superimposed structures of all regions + 'rasmol \-script TM.sup_all'. .SH SEE ALSO .BR http://zhang.bioinformatics.ku.edu/TM-align/, Modified: trunk/packages/zhanglab/tm-align/trunk/debian/changelog =================================================================== --- trunk/packages/zhanglab/tm-align/trunk/debian/changelog 2014-02-13 15:47:08 UTC (rev 16024) +++ trunk/packages/zhanglab/tm-align/trunk/debian/changelog 2014-02-13 15:49:25 UTC (rev 16025) @@ -1,19 +1,16 @@ -tm-align (20120707-1) experimental; urgency=low +tm-align (20130511+dfsg-1) unstable; urgency=low * New upstream version - * Adjusted - - path to svn (got its own zhanglab subfolder) - - policy became 3.9.4 - - -- Steffen Moeller <[email protected]> Thu, 18 Oct 2012 17:12:22 +0200 - -tm-align (20120507-2) UNRELEASED; urgency=low - * debian/copyright: - Add Files-Excluded to document what was removed from original source * debian/watch: enable handling of +dfsg suffix + * debian/get-orig-source: use new uscan of available + * debian/upstream: more detailed information + * debian/control: + - cme fix dpkg-control + - use anonscm in Vcs fields - -- Andreas Tille <[email protected]> Fri, 24 Aug 2012 16:22:01 +0200 + -- Andreas Tille <[email protected]> Fri, 02 Aug 2013 14:55:58 +0200 tm-align (20120507-1) unstable; urgency=low Modified: trunk/packages/zhanglab/tm-align/trunk/debian/control =================================================================== --- trunk/packages/zhanglab/tm-align/trunk/debian/control 2014-02-13 15:47:08 UTC (rev 16024) +++ trunk/packages/zhanglab/tm-align/trunk/debian/control 2014-02-13 15:49:25 UTC (rev 16025) @@ -1,21 +1,23 @@ Source: tm-align +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Steffen Moeller <[email protected]>, + Tim Booth <[email protected]>, + Andreas Tille <[email protected]> Section: science Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes -Uploaders: Steffen Moeller <[email protected]>, - Tim Booth <[email protected]>, - Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 9), gfortran +Build-Depends: debhelper (>= 9), + gfortran Standards-Version: 3.9.4 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/zhanglab/tm-align/trunk/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/zhanglab/tm-align/trunk/ +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/tm-align/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/tm-align/trunk/ Homepage: http://zhang.bioinformatics.ku.edu/TM-align/ Package: tm-align Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} -Suggests: pymol, rasmol +Depends: ${shlibs:Depends}, + ${misc:Depends} +Suggests: pymol, + rasmol Enhances: t-coffee Description: structual alignment of proteins TM-align is a computer algorithm for protein structure alignment using @@ -23,3 +25,4 @@ matrix. This is similar to the RMSD in that unaligned portions of the structure influence the scoring less than the more structurally conserved regions. + Modified: trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source =================================================================== --- trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source 2014-02-13 15:47:08 UTC (rev 16024) +++ trunk/packages/zhanglab/tm-align/trunk/debian/get-orig-source 2014-02-13 15:49:25 UTC (rev 16025) @@ -3,6 +3,16 @@ # bail out with the first problem set -e +# Remark: A new uscan that enables easier handling of removing files can be +# obtained via +# git clone git://[email protected]/git/users/tille/devscripts.git +# and then copy scripts/uscan.pl as uscan at the beginning of your PATH +if uscan --help | grep -q -- --repack-compression ; then + echo "Use new enhanced uscan" + uscan --verbose --force-download --repack-compression xz + exit +fi + # script to download and repack source package of TMalign which strips the binaries from upstream tarball PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'` @@ -26,6 +36,6 @@ rm -rf TMscore TMalign cd .. -GZIP="--best --no-name" tar czf "$PKG"_"$VERSION".orig.tar.gz "${UPSTREAMDIR}" +GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz "${UPSTREAMDIR}" rm -rf "${UPSTREAMDIR}" Modified: trunk/packages/zhanglab/tm-align/trunk/debian/rules =================================================================== --- trunk/packages/zhanglab/tm-align/trunk/debian/rules 2014-02-13 15:47:08 UTC (rev 16024) +++ trunk/packages/zhanglab/tm-align/trunk/debian/rules 2014-02-13 15:49:25 UTC (rev 16025) @@ -24,5 +24,5 @@ dh_clean get-orig-source: - debian/get-orig-source && echo worked || echo failed + . debian/get-orig-source Modified: trunk/packages/zhanglab/tm-align/trunk/debian/watch =================================================================== --- trunk/packages/zhanglab/tm-align/trunk/debian/watch 2014-02-13 15:47:08 UTC (rev 16024) +++ trunk/packages/zhanglab/tm-align/trunk/debian/watch 2014-02-13 15:49:25 UTC (rev 16025) @@ -1,3 +1,3 @@ version=3 opts=dversionmangle=s/[~\+]dfsg// \ - http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools([\d]*)\.tar\.gz +http://zhanglab.ccmb.med.umich.edu/TM-align/TMtools([\d]*)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
