This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository blat.
commit 7aa0a6367d07fd45f244d785554bd36b519c23c6 Author: Andreas Tille <[email protected]> Date: Wed Feb 26 13:22:40 2014 +0100 Several small enhancements and polishing; main change: When using -O2 optimisation the BLAT test (cd blat/test; make) will fail - so we are using -O1 instead --- debian/clean | 7 +++++++ debian/control | 2 +- debian/rules | 12 +++--------- 3 files changed, 11 insertions(+), 10 deletions(-) diff --git a/debian/clean b/debian/clean index ad18507..49ca4c2 100644 --- a/debian/clean +++ b/debian/clean @@ -1,4 +1,11 @@ +blat/test/badSplice/small2.log +blat/test/badSplice/small2.psl +blat/test/badSplice/smallBest2.psl blat/test/intron50k/out/* blat/test/throwback/test.psl blat/test/v29skips/ex1.psl +blat/test/v29skips/ex2.psl +gfServer/tests/testPcr.out +gfServer/tests/testProtNib.out webBlat/webBlat +blat/test/pslCheck diff --git a/debian/control b/debian/control index 8dbc63a..a976254 100644 --- a/debian/control +++ b/debian/control @@ -13,7 +13,7 @@ Homepage: http://genome.ucsc.edu/cgi-bin/hgBlat Package: blat Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} -Description: The BLAST-Like Alignment Tool +Description: BLAST-Like Alignment Tool BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more. It may miss more divergent or shorter sequence alignments. It will find perfect sequence matches of 25 bases, and diff --git a/debian/rules b/debian/rules index 9a7e095..21e83f4 100755 --- a/debian/rules +++ b/debian/rules @@ -2,14 +2,7 @@ DH_VERBOSE := 1 -# some helpful variables - uncomment them if needed -# shamelessly stolen from http://jmtd.net/log/awk/ -#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') -#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') -#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') -#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) -#GIT_TAG := $(subst ~,_,$(VERSION)) # alternatively to manually set those variables you can # include /usr/share/cdbs/1/rules/buildvars.mk @@ -19,6 +12,9 @@ DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') MACHTYPE := $(shell dpkg-architecture -qDEB_HOST_GNU_CPU) DESTDIR := $(CURDIR)/debian/$(DEBPKGNAME)/usr/ +# When using -O2 optimisation the BLAT test (cd blat/test; make) will fail +CFLAGS:=$(shell dpkg-buildflags --get CFLAGS | sed 's/-O2/-O1/') + %: dh $@ @@ -30,5 +26,3 @@ override_dh_auto_install: dh_auto_build -- MACHTYPE="$(MACHTYPE)" DESTDIR="$(DESTDIR)" BINDIR=bin/ # cd debian/pslCheck; make MACHTYPE="$(MACHTYPE)" DESTDIR="$(DESTDIR)" BINDIR=bin/ -#get-orig-source: -# . debian/get-orig-source -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/blat.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
