Author: tille Date: 2014-03-18 15:36:18 +0000 (Tue, 18 Mar 2014) New Revision: 16464
Added: trunk/packages/R/r-cran-qtl/trunk/debian/links trunk/packages/R/r-cran-qtl/trunk/debian/tests/ trunk/packages/R/r-cran-qtl/trunk/debian/tests/control trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.test trunk/packages/R/r-cran-qtl/trunk/debian/changelog trunk/packages/R/r-cran-qtl/trunk/debian/control trunk/packages/R/r-cran-qtl/trunk/debian/rules Log: Update debian/README.test to explain how to sensibly test the package Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.test =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/README.test 2014-03-18 15:30:33 UTC (rev 16463) +++ trunk/packages/R/r-cran-qtl/trunk/debian/README.test 2014-03-18 15:36:18 UTC (rev 16464) @@ -1,7 +1,11 @@ Notes on how this package can be tested. ──────────────────────────────────────── -This package can be tested by loading it into R with the command -‘library(qtl)’ in order to confirm its integrity. +This package can be tested by running the unit test: - -- Steffen Moeller <[email protected]> Wed, 10 Oct 2007 13:43:39 +0200 +cd /usr/share/doc/r-cran-qtl/tests +for qtltest in `ls *.R` ; do + R --no-save < $qtltest +done + + Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2014-03-18 15:30:33 UTC (rev 16463) +++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2014-03-18 15:36:18 UTC (rev 16464) @@ -3,6 +3,9 @@ * New upstream version * debian/upstream -> debian/upstream/metadata * cme fix dpkg-control + * drop "Recommends: r-cran-rlecuyer" since this is neither packaged + for Debian nor mentioned inside source code + * Update debian/README.test to explain how to sensibly test the package -- Andreas Tille <[email protected]> Tue, 18 Mar 2014 16:05:24 +0100 Modified: trunk/packages/R/r-cran-qtl/trunk/debian/control =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/control 2014-03-18 15:30:33 UTC (rev 16463) +++ trunk/packages/R/r-cran-qtl/trunk/debian/control 2014-03-18 15:36:18 UTC (rev 16464) @@ -16,7 +16,6 @@ Architecture: any Depends: ${shlibs:Depends}, ${R:Depends} -Recommends: r-cran-rlecuyer Suggests: r-cran-snow Description: GNU R package for genetic marker linkage analysis R/qtl is an extensible, interactive environment for mapping quantitative Added: trunk/packages/R/r-cran-qtl/trunk/debian/links =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/links (rev 0) +++ trunk/packages/R/r-cran-qtl/trunk/debian/links 2014-03-18 15:36:18 UTC (rev 16464) @@ -0,0 +1,4 @@ +usr/lib/R/site-library/qtl/sampledata/gen.txt usr/share/doc/r-cran-qtl/tests/gen.txt +usr/lib/R/site-library/qtl/sampledata/listeria.csv usr/share/doc/r-cran-qtl/tests/listeria.csv +usr/lib/R/site-library/qtl/sampledata/map.txt usr/share/doc/r-cran-qtl/tests/map.txt +usr/lib/R/site-library/qtl/sampledata/phe.txt usr/share/doc/r-cran-qtl/tests/phe.txt Modified: trunk/packages/R/r-cran-qtl/trunk/debian/rules =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/rules 2014-03-18 15:30:33 UTC (rev 16463) +++ trunk/packages/R/r-cran-qtl/trunk/debian/rules 2014-03-18 15:36:18 UTC (rev 16464) @@ -1,3 +1,9 @@ #!/usr/bin/make -f include /usr/share/R/debian/r-cran.mk + +install/$(package):: + mkdir -p debian/$(package)/usr/share/doc/$(package) + mv debian/$(package)/usr/lib/R/site-library/$(cranNameOrig)/contrib debian/$(package)/usr/share/doc/$(package)/examples + mkdir -p debian/$(package)/usr/share/doc/$(package)/tests + cp -a tests/*.R tests/*.csv tests/*.map tests/*.raw tests/*.Rout.save debian/$(package)/usr/share/doc/$(package)/tests Added: trunk/packages/R/r-cran-qtl/trunk/debian/tests/control =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/tests/control (rev 0) +++ trunk/packages/R/r-cran-qtl/trunk/debian/tests/control 2014-03-18 15:36:18 UTC (rev 16464) @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @, r-cran-runit +Restrictions: allow-stderr Added: trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test (rev 0) +++ trunk/packages/R/r-cran-qtl/trunk/debian/tests/run-unit-test 2014-03-18 15:36:18 UTC (rev 16464) @@ -0,0 +1,6 @@ +#!/bin/sh -e + +R --no-save <<EOT +require("XVector") +XVector:::run_unitTests() +EOT _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
