Author: tille
Date: 2014-04-01 07:43:12 +0000 (Tue, 01 Apr 2014)
New Revision: 16550
Removed:
trunk/packages/python-biom-format/trunk/debian/biom.1
Modified:
trunk/packages/python-biom-format/trunk/debian/changelog
trunk/packages/python-biom-format/trunk/debian/manpages
trunk/packages/python-biom-format/trunk/debian/rules
Log:
Do not install scripts printing "This script no longer exists. ..." any more;
Use manpage created by sphinx
Deleted: trunk/packages/python-biom-format/trunk/debian/biom.1
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/biom.1 2014-04-01
07:17:15 UTC (rev 16549)
+++ trunk/packages/python-biom-format/trunk/debian/biom.1 2014-04-01
07:43:12 UTC (rev 16550)
@@ -1,24 +0,0 @@
-.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.43.3.
-.TH BIOM "1" "November 2013" "biom 1.2.0" "User Commands"
-.SH NAME
-biom \- wrapper for Biological Observation Matrix
-.SH SYNOPSIS
-.B biom
-<\fBcommand\fR> [<\fBargs\fR>]
-.SH DESCRIPTION
-.PP
-The BIOM file format (canonically pronounced biome) is designed to be a
-general-use format for representing biological sample by observation
-contingency tables. BIOM is a recognized standard for the Earth
-Microbiome Project and is a Genomics Standards Consortium candidate
-project.
-.PP
-To see a list of all available commands, run the following command:
-.IP
-biom
-.PP
-See
-.IP
-biom help <command>
-.PP
-for more information on a specific command.
\ No newline at end of file
Modified: trunk/packages/python-biom-format/trunk/debian/changelog
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/changelog 2014-04-01
07:17:15 UTC (rev 16549)
+++ trunk/packages/python-biom-format/trunk/debian/changelog 2014-04-01
07:43:12 UTC (rev 16550)
@@ -8,6 +8,9 @@
* Incorporate changes by BioLinux
* debian/patches/no-web-adds.patch: Save user privacy by preventing inclusion
of web adds
+ * Do not install scripts printing "This script no longer exists. ..."
+ any more
+ * Use manpage created by sphinx
-- Andreas Tille <[email protected]> Thu, 27 Mar 2014 11:52:15 +0100
Modified: trunk/packages/python-biom-format/trunk/debian/manpages
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/manpages 2014-04-01
07:17:15 UTC (rev 16549)
+++ trunk/packages/python-biom-format/trunk/debian/manpages 2014-04-01
07:43:12 UTC (rev 16550)
@@ -1,2 +1 @@
doc/_build/man/*
-debian/*.1
Modified: trunk/packages/python-biom-format/trunk/debian/rules
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/rules 2014-04-01
07:17:15 UTC (rev 16549)
+++ trunk/packages/python-biom-format/trunk/debian/rules 2014-04-01
07:43:12 UTC (rev 16550)
@@ -20,11 +20,15 @@
override_dh_auto_build:
dh_auto_build
- cd doc && make man singlehtml
+ cd doc && make singlehtml
env PYTHONPATH=. pyqi make-bash-completion \
--command-config-module biom.interfaces.optparse.config \
--driver-name biom -o debian/bash-completion
+override_dh_installman:
+ cd doc && make man
+ dh_installman
+
override_dh_auto_clean:
rm -rf build/tests
dh_auto_clean
@@ -36,32 +40,10 @@
override_dh_install:
dh_install
dh_bash-completion
- # These commands are deprecated but in the upstream they are still
present
- # remove language extension
- rename 's/\.py$$//;' $(bindir)/*
- # give one binary a less generic name
- mv $(bindir)/add_metadata $(bindir)/add_biom_metadata
+ # All *.py scripts simply say
+ # "This script no longer exists. ..."
+ rm -f $(bindir)/*.py
-override_dh_installman:
- dh_installman
- # try to create man pages whereever possible
- mkdir -p $(mandir)
- export PYTHONPATH=$(CURDIR)/python-code ; \
- help2man --no-info --version-string="$(version)" \
- --name="Script to add sample and/or observation metadata to
BIOM-formatted files." \
- $(bindir)/add_biom_metadata > $(mandir)/add_biom_metadata.1 ; \
- help2man --no-info --version-string="$(version)" \
- --name='Test a biom file for adherence to the format
specification' \
- $(bindir)/biom_validator > $(mandir)/biom_validator.1 ; \
- help2man --no-info --name='Script to convert biom formatted files' \
- $(bindir)/convert_biom > $(mandir)/convert_biom.1 ; \
- help2man --no-info --version-string="$(version)" \
- --name='summarize sample or observation data in BIOM-formatted
files' \
- $(bindir)/print_biom_table_summary >
$(mandir)/print_biom_table_summary.1 ; \
- help2man --no-info --version-string="$(version)" \
- --name='subset a BIOM file, over either the observations or
samples' \
- $(bindir)/subset_biom > $(mandir)/subset_biom.1
-
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
set -e -x;\
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
