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tille pushed a change to branch master
in repository bamtools.
from faee5bd Imported Upstream version 2.2.3
new bfd618f Imported Upstream version 2.3.0+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 4 +-
docs/Doxyfile | 2 +-
src/api/CMakeLists.txt | 14 +-
src/api/SamHeader.cpp | 1 +
src/api/internal/bam/BamMultiReader_p.cpp | 4 +-
src/api/internal/index/CMakeLists.txt | 4 +-
src/api/internal/io/BamHttp_p.cpp | 394 ++++++++++++++++++++----------
src/api/internal/io/BamHttp_p.h | 8 +-
src/api/internal/io/CMakeLists.txt | 22 +-
src/api/internal/io/HttpHeader_p.h | 2 +-
src/api/internal/io/RollingBuffer_p.cpp | 6 +-
src/api/internal/io/TcpSocket_p.cpp | 6 +-
src/api/internal/io/TcpSocket_p.h | 6 +-
src/api/internal/sam/CMakeLists.txt | 4 +-
src/api/internal/utils/CMakeLists.txt | 4 +-
src/toolkit/CMakeLists.txt | 2 +-
src/toolkit/bamtools_convert.cpp | 2 +-
src/toolkit/bamtools_coverage.cpp | 3 +-
src/toolkit/bamtools_filter.cpp | 28 ++-
src/toolkit/bamtools_random.cpp | 24 +-
src/toolkit/bamtools_resolve.cpp | 20 +-
src/toolkit/bamtools_split.cpp | 23 +-
src/utils/CMakeLists.txt | 4 +-
src/utils/bamtools_filter_engine.h | 5 +-
24 files changed, 396 insertions(+), 196 deletions(-)
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